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SCNpilot_bf_inoc_scaffold_40_curated

Search features with annotation key words

Displaying items 1-30 of 201 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_40_curated_1
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93..953)
DNA (861bp) protein (287aa)
Transposase n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TBT0_9GAMM
Transposase {ECO:0000313|EMBL:EIT71345.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
integrase catalytic subunit
SCNpilot_bf_inoc_scaffold_40_curated_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(1084..2172)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00037384BD
hypothetical protein
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
SCNpilot_bf_inoc_scaffold_40_curated_3
unknown

Not on your lists

2946..3329
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_40_curated_4
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3565..5379
DNA (1815bp) protein (605aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
Putative DNA helicase (Modular protein) n=1 Tax=Rhizobium sp. RepID=L0NNA9_RHISP
DNA/RNA helicase
SCNpilot_bf_inoc_scaffold_40_curated_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5393..7252
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002E34589
Uncharacterized protein {ECO:0000313|EMBL:EJP79504.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7249..8232)
DNA (984bp) protein (328aa)
TIR protein n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L2Y1_METC4
TIR protein
TIR protein {ECO:0000313|EMBL:ACK86189.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_bf_inoc_scaffold_40_curated_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8304..9791)
DNA (1488bp) protein (496aa)
Integrase n=1 Tax=Xanthomonas citri subsp. citri Aw12879 RepID=M4VWG8_XANCI
Uncharacterized protein {ECO:0000313|EMBL:KGI76896.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
xerC; Integrase
SCNpilot_bf_inoc_scaffold_40_curated_8
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10035..10424)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa S54485 RepID=U9P7V2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KFA35859.1}; TaxID=1094180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola pv. vasculorum NCPPB 1381.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_9
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10845..12824
DNA (1980bp) protein (660aa)
RHS repeat-associated core domain protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VT62_9CYAN
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AFZ10677.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
SCNpilot_bf_inoc_scaffold_40_curated_10
unknown

Not on your lists

12821..13387
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_40_curated_11
Listeria ivanovii, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13395..14015
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Listeria ivanovii (strain ATCC BAA-678 / PAM 55) RepID=G2ZEM6_LISIP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBW85538.1}; TaxID=881621 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria ivanovii (strain ATCC BAA-678 / PAM 55).;"
SCNpilot_bf_inoc_scaffold_40_curated_12
unknown

Not on your lists

comp(14404..15270)
DNA (867bp) protein (289aa)
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_13
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15402..16145)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D1C4_STEMA
Strain LMCP11 contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27760.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_14
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16142..17017)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Y79_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD69274.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_bf_inoc_scaffold_40_curated_15
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17322..18284
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQ65_RUBGI
Uncharacterized protein {ECO:0000313|EMBL:KGM55995.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18989..19285)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI00036D8882
Uncharacterized protein {ECO:0000313|EMBL:KFJ11474.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_17
Gluconobacter frateurii, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19494..20078)
DNA (585bp) protein (195aa)
Uncharacterized protein n=2 Tax=Pseudomonas syringae group RepID=F3ID09_PSESL
Uncharacterized protein {ECO:0000313|EMBL:GAN90095.1}; TaxID=1231354 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter frateurii M-2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_18
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20477..23593)
DNA (3117bp) protein (1039aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
dnaE2; error-prone DNA polymerase (EC:2.7.7.7)
DNA polymerase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D26FBB
SCNpilot_bf_inoc_scaffold_40_curated_19
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23631..25037)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AMM1_PSERE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN50120.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
SCNpilot_bf_inoc_scaffold_40_curated_20
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25045..25671)
DNA (627bp) protein (209aa)
CDP-6-deoxy-delta-3,4-glucoseen reductase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000311E612
RecA/RadA recombinase {ECO:0000313|EMBL:ELS27295.1}; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25671..26288)
DNA (618bp) protein (206aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
transcriptional repressor, LexA family; K01356 repressor LexA [EC:3.4.21.88]
umuDC operon protein-like protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003087BA1
SCNpilot_bf_inoc_scaffold_40_curated_22
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

26650..27534
DNA (885bp) protein (295aa)
id=4142265 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=GWF2_Lentisphaerae_50_93_curated
SCNpilot_bf_inoc_scaffold_40_curated_23
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27565..27852)
DNA (288bp) protein (96aa)
Helix-turn-helix protein n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0BZP8_9XANT
DNA-binding protein {ECO:0000313|EMBL:KER80926.1}; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
DNA-binding protein
SCNpilot_bf_inoc_scaffold_40_curated_24
unknown

Not on your lists

27987..29045
DNA (1059bp) protein (353aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_40_curated_25
unknown

Not on your lists

comp(29335..29664)
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_40_curated_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29778..30893
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EU35_BRASB
Uncharacterized protein {ECO:0000313|EMBL:AKC86952.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_40_curated_27
Geobacillus kaustophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31165..32208
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA016 RepID=U9M1E8_PSEAI
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:GAD15307.1}; TaxID=1337888 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus kaustophilus GBlys.;"
cobyrinic acid ac-diamide synthase
SCNpilot_bf_inoc_scaffold_40_curated_28
Geobacillus sp. A8, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32212..32946
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA016 RepID=U9M6A9_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQB94185.1}; Flags: Fragment;; TaxID=1095383 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. A8.;"
SCNpilot_bf_inoc_scaffold_40_curated_29
Dickeya dadantii, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33734..34354
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Burkholderia cenocepacia (strain HI2424) RepID=A0K364_BURCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS87589.1}; TaxID=579405 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya dadantii (strain Ech703).;"
SCNpilot_bf_inoc_scaffold_40_curated_30
Dickeya dadantii, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34354..35442
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Burkholderia cenocepacia (strain HI2424) RepID=A0K365_BURCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS87588.1}; TaxID=579405 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya dadantii (strain Ech703).;"
Displaying items 1-30 of 201 in total

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