ggKbase home page

SCNpilot_bf_inoc_scaffold_44_curated_20

Organism: scnpilot_dereplicated_Xanthomonadales_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(28337..28903)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QMR3_9CYAN similarity UNIREF
DB: UNIREF100
  • Identity: 42.5
  • Coverage: 186.0
  • Bit_score: 150
  • Evalue 1.40e-33
RNA polymerase sigma 70 {ECO:0000313|EMBL:EYR68784.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.8
  • Coverage: 192.0
  • Bit_score: 155
  • Evalue 1.10e-34
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 42.5
  • Coverage: 186.0
  • Bit_score: 150
  • Evalue 4.50e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGAGCGCCGCACCGATCACCGAACTGCTGGAGCGCTGGCGGACCGGGGAAACCGGCGCCGCCGACGCGCTGATGGAGCAGGTCTACCCGCTGCTGCGCGAGATCGCCCAGTCGCGCCTGCGCCGGCATGCGCGCGGCGCGACCCTGCAGCCGACCGAACTGGCCAACGAAGCCTATGCGCGACTGCATGGCGCACGCACGACCGACTGGCGCAATCGCGCGCATTTCTTCGCGTTCTCCGCCAGGGTCATACGCAGCCTAGCGGTCGACTACGTGCGCGCCCGCGACAGCGAGAAGCGCGGCGGCCATCTGCTCCTGCTGCCGCTGGAGCAGGCCGACGACACGCCGGCCGATGCCGACGACCTCGACGTGCTGGCGATAGACCAGGCGCTCACCGATCTCGAATGCGACGACGCGGTGCTCGCGCAGATCGTCGAGCTCAAGTTCTTTTCCGGTCTCAGCACCGAGGAAATCGCCGAAACCTGCGGCCTGTCGCGGGCGACGGTCGTGCGCCGCTGGCGTTACGCGCGCGCCTGGCTGGCCGACCGCCTCGGCAACCGCACATGA
PROTEIN sequence
Length: 189
MSAAPITELLERWRTGETGAADALMEQVYPLLREIAQSRLRRHARGATLQPTELANEAYARLHGARTTDWRNRAHFFAFSARVIRSLAVDYVRARDSEKRGGHLLLLPLEQADDTPADADDLDVLAIDQALTDLECDDAVLAQIVELKFFSGLSTEEIAETCGLSRATVVRRWRYARAWLADRLGNRT*