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SCNpilot_bf_inoc_scaffold_44_curated

Search features with annotation key words

Displaying items 1-30 of 512 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_44_curated_1
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81..2618)
DNA (2538bp) protein (846aa)
hypothetical protein n=1 Tax=Laceyella sacchari RepID=UPI0003B7B2DC
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_bf_inoc_scaffold_44_curated_2
unknown

Not on your lists

3233..3511
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3563..6346)
DNA (2784bp) protein (928aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valine--tRNA ligase; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
valyl-tRNA synthetase id=2591254 bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas translucens genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_bf_inoc_scaffold_44_curated_4
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6509..7561
DNA (1053bp) protein (351aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL35977.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Cyclic nucleotide-binding domain protein id=2940949 bin=GWF1_Xanthomonadales_69_6 species=gamma proteobacterium HTCC5015 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
cyclic nucleotide-binding protein
SCNpilot_bf_inoc_scaffold_44_curated_5
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7746..9197)
DNA (1452bp) protein (484aa)
Transcriptional regulator, GntR family n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SM39_NOCSJ
Uncharacterized protein {ECO:0000313|EMBL:KFL35600.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
GntR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_44_curated_6
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9258..9935
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6W6S7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KFL35599.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9991..10971)
DNA (981bp) protein (327aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
proline iminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5]
proline iminopeptidase n=1 Tax=Variovorax paradoxus RepID=UPI00035C8227
SCNpilot_bf_inoc_scaffold_44_curated_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11156..11800)
DNA (645bp) protein (215aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E3C90
SCNpilot_bf_inoc_scaffold_44_curated_9
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11853..12305)
DNA (453bp) protein (151aa)
EVE domain-containing protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034574A1
EVE domain-containing protein {ECO:0000313|EMBL:EYR67780.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12469..13071)
DNA (603bp) protein (201aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WW00_9GAMM
5,10-methenyltetrahydrofolate synthetase
SCNpilot_bf_inoc_scaffold_44_curated_11
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13649..13951)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003711012
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein; K09888 cell division protein ZapA
SCNpilot_bf_inoc_scaffold_44_curated_12
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14121..14345)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036DA016
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_44_curated_13
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14409..18980)
DNA (4572bp) protein (1524aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Shewanella sp. (strain MR-7) RepID=Q0HZZ0_SHESR
Diguanylate cyclase {ECO:0000313|EMBL:GAN45398.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
SCNpilot_bf_inoc_scaffold_44_curated_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19127..19696
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360D115
Uncharacterized protein {ECO:0000313|EMBL:GAN45397.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein; K09895 hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_15
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19710..21020
DNA (1311bp) protein (437aa)
peptidase M24B X-Pro dipeptidase/aminopeptidase domain-containing protein; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003749A10
Proline aminopeptidase P II {ECO:0000313|EMBL:GAN45396.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_44_curated_16

Not on your lists

21174..22532
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003619EC7
Virulence factor family protein {ECO:0000313|EMBL:EQD64415.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
AcvB-like protein
SCNpilot_bf_inoc_scaffold_44_curated_17
unknown

Not on your lists

22558..23253
DNA (696bp) protein (232aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23263..25881)
DNA (2619bp) protein (873aa)
lysylcardiolipin synthase / lysyltransferase; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DAC7C
Lysyl transferase {ECO:0000313|EMBL:GAN45394.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_44_curated_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(26004..28340)
DNA (2337bp) protein (779aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
serine/threonine protein kinase n=1 Tax=Salisaeta longa RepID=UPI0003B639AE
Protein kinase {ECO:0000313|EMBL:AHG88165.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SCNpilot_bf_inoc_scaffold_44_curated_20
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28337..28903)
DNA (567bp) protein (189aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QMR3_9CYAN
RNA polymerase sigma 70 {ECO:0000313|EMBL:EYR68784.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
ECF subfamily RNA polymerase sigma-24 factor
SCNpilot_bf_inoc_scaffold_44_curated_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29074..29751)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00036E8955
Uncharacterized protein {ECO:0000313|EMBL:AHY58598.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29963..31291)
DNA (1329bp) protein (443aa)
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582};; Imidodipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Proline dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Xaa-Pro dipeptidase; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;
Xaa-Pro dipeptidase (EC:3.4.13.9)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382485C
SCNpilot_bf_inoc_scaffold_44_curated_23
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31501..32841
DNA (1341bp) protein (447aa)
MFS transporter n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000345512C
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_44_curated_24
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32838..33983
DNA (1146bp) protein (382aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WT47_PSEUU
Epimerase {ECO:0000313|EMBL:AKC88029.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
NAD-dependent epimerase/dehydratase
SCNpilot_bf_inoc_scaffold_44_curated_25
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34281..35240)
DNA (960bp) protein (320aa)
Putative threonine dehydratase catabolic {ECO:0000313|EMBL:CCH21522.1}; EC=4.3.1.19 {ECO:0000313|EMBL:CCH21522.1};; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
Putative threonine dehydratase catabolic n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LCH5_9ACTO
SCNpilot_bf_inoc_scaffold_44_curated_26
Pantoea anthophila, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35723..36151)
DNA (429bp) protein (143aa)
LysM domain/BON superfamily protein n=1 Tax=Pantoea sp. Sc1 RepID=H8DIH9_9ENTR
peptidoglycan-binding protein LysM
Peptidoglycan-binding protein {ECO:0000313|EMBL:KKB04333.1}; TaxID=470931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea anthophila.;"
SCNpilot_bf_inoc_scaffold_44_curated_27
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36354..37073)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C8EE7
Putative uncharacterized protein {ECO:0000313|EMBL:EHN64342.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_28
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37235..37579
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00037C7DFB
Diguanylate cyclase {ECO:0000313|EMBL:EQM79323.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
response regulator receiver modulated diguanylate cyclase
SCNpilot_bf_inoc_scaffold_44_curated_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37667..38587
DNA (921bp) protein (307aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
arginase; K01476 arginase [EC:3.5.3.1]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036BB2A2
SCNpilot_bf_inoc_scaffold_44_curated_30
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38655..39464)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E2F92
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFB72440.1}; Flags: Precursor;; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
Displaying items 1-30 of 512 in total

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