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SCNpilot_bf_inoc_scaffold_44_curated

Search features with annotation key words

Displaying items 121-150 of 512 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_44_curated_121
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156869..157783
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360EC6E
methyltransferase domain protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_44_curated_122
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157983..159848
DNA (1866bp) protein (622aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036054E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE16647.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_bf_inoc_scaffold_44_curated_123
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159862..160758
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036947D1
Glycosyl transferase family 2 {ECO:0000313|EMBL:AIF49300.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative glycosyltransferase; K07011
SCNpilot_bf_inoc_scaffold_44_curated_124
unknown

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comp(160766..161434)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_125
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161607..163268)
DNA (1662bp) protein (554aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella japonica RepID=UPI0002E45678
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIF49286.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ChvD family ATP-binding protein
SCNpilot_bf_inoc_scaffold_44_curated_126
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

163475..163996
DNA (522bp) protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF84728.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
SCNpilot_bf_inoc_scaffold_44_curated_127
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164078..165064)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3D2A1_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_bf_inoc_scaffold_44_curated_128
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(165061..167244)
DNA (2184bp) protein (728aa)
TPR repeat-containing protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QSV8_METTR
TPR repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_bf_inoc_scaffold_44_curated_129
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

167347..168600
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase id=2615361 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
glycine/serine hydroxymethyltransferase
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_44_curated_130
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

168712..169233
DNA (522bp) protein (174aa)
Transcriptional regulator NrdR n=1 Tax=mine drainage metagenome RepID=T1CCE8_9ZZZZ
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
SCNpilot_bf_inoc_scaffold_44_curated_131
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

169254..170435
DNA (1182bp) protein (394aa)
riboflavin-specific deaminase/5-amino-6-uracil reductase; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTP7_9GAMM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_44_curated_132
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

170511..171110
DNA (600bp) protein (200aa)
riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase subunit alpha n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ99_9GAMM
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:EIL99540.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_bf_inoc_scaffold_44_curated_133
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

171173..172267
DNA (1095bp) protein (365aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.2.- 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Dyella ginsengisoli RepID=UPI00034D7A86
SCNpilot_bf_inoc_scaffold_44_curated_134
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

172487..172951
DNA (465bp) protein (155aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
RibH; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D21C5
SCNpilot_bf_inoc_scaffold_44_curated_135
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

172948..173403
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035CEBAF
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
transcription antitermination factor NusB; K03625 N utilization substance protein B
SCNpilot_bf_inoc_scaffold_44_curated_136
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

173410..174384
DNA (975bp) protein (325aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Thiamine-monophosphate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZA7_9GAMM
thiamine-phosphate kinase
SCNpilot_bf_inoc_scaffold_44_curated_137
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

174381..174872
DNA (492bp) protein (164aa)
phosphatidylglycerophosphatase A; K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27]
Phosphatidylglycerophosphatase A id=2892365 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodanobacter spathiphylli genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_44_curated_138
unknown

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comp(174869..175645)
DNA (777bp) protein (259aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_139
unknown

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comp(175740..176291)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_140
unknown

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comp(176288..176833)
DNA (546bp) protein (182aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_141
unknown

Not on your lists

comp(176830..177267)
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_142
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(177277..178653)
DNA (1377bp) protein (459aa)
oxidoreductase, FAD-binding; K03777 D-lactate dehydrogenase [EC:1.1.1.28] rbh
dimethylmenaquinone methyltransferase n=1 Tax=Dyella japonica RepID=UPI000305B81C
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:AHX14657.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_44_curated_143
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178657..179241)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CD2D3
Putative phospholipid-binding domain protein {ECO:0000313|EMBL:EGV49893.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
transport-associated
SCNpilot_bf_inoc_scaffold_44_curated_144
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(179252..179602)
DNA (351bp) protein (117aa)
UPF0102 protein UUA_01814 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT05_9GAMM
UPF0102 protein LF63_0112505 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
TIGR00252 family protein
SCNpilot_bf_inoc_scaffold_44_curated_145
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(179602..181377)
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C25BC
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AGG90347.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_44_curated_146
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

181460..182296
DNA (837bp) protein (279aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Rhodanobacter denitrificans RepID=M4NS29_9GAMM
putative S-adenosylmethionine-dependent methyltransferase, YraL family
SCNpilot_bf_inoc_scaffold_44_curated_147
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(183344..184036)
DNA (693bp) protein (231aa)
Probable glutathione S-transferase n=2 Tax=Bordetella bronchiseptica RepID=K0MJC6_BORBM
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:KDD58709.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_bf_inoc_scaffold_44_curated_148
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184284..184559
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWM6_PSEUU
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_bf_inoc_scaffold_44_curated_149
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184614..185723
DNA (1110bp) protein (370aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
S-(hydroxymethyl)glutathione dehydrogenase-class III alcohol dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
S-(Hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SWL3_XANCT
SCNpilot_bf_inoc_scaffold_44_curated_150
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

185735..186574
DNA (840bp) protein (280aa)
S-formylglutathione hydrolase (EC:3.1.2.12); K01070 S-formylglutathione hydrolase [EC:3.1.2.12]
S-formylglutathione hydrolase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TXV9_STEMA
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
Displaying items 121-150 of 512 in total

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