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SCNpilot_bf_inoc_scaffold_44_curated

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Displaying items 31-60 of 512 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_44_curated_31
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39590..39919)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99908.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein; K09946 hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_32
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40088..41383
DNA (1296bp) protein (432aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
tryptophanyl-tRNA synthetase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C079C
SCNpilot_bf_inoc_scaffold_44_curated_33
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41451..44708
DNA (3258bp) protein (1086aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003624ECD
hypothetical protein; K07126
Tax=GWA2_Gallionellales_55_18_curated
SCNpilot_bf_inoc_scaffold_44_curated_34
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44736..45119)
DNA (384bp) protein (128aa)
glyoxalase n=1 Tax=Dyella japonica RepID=UPI0002EFE657
Glyoxalase {ECO:0000313|EMBL:AIF49430.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_35
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(45286..47859)
DNA (2574bp) protein (858aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E822_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN10220.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_36
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47894..48442)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI000378279D
Uncharacterized protein {ECO:0000313|EMBL:AJC46643.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_37
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48522..49946)
DNA (1425bp) protein (475aa)
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Dyella japonica RepID=UPI00030E5BC4
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:AIF49428.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
SCNpilot_bf_inoc_scaffold_44_curated_38
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50082..50426)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G9Z2_XANCT
Uncharacterized protein {ECO:0000313|EMBL:ELQ02775.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_39
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50437..51417)
DNA (981bp) protein (327aa)
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B36717
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:GAN45698.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
SCNpilot_bf_inoc_scaffold_44_curated_40
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51631..52713)
DNA (1083bp) protein (361aa)
ABC transporter permease n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3B080
Uncharacterized protein {ECO:0000313|EMBL:KFN41906.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
pyruvate dehydrogenase E1 component, alpha subunit
SCNpilot_bf_inoc_scaffold_44_curated_41
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52992..53849
DNA (858bp) protein (286aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="
tryptophan 2,3-dioxygenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B446ED
tryptophan 2,3-dioxygenase (vermilion)
SCNpilot_bf_inoc_scaffold_44_curated_42
Gallaecimonas xiamenensis, Gallaecimonas, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54377..55840
DNA (1464bp) protein (488aa)
Amino acid/peptide transporter n=1 Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2IY15_9GAMM
Amino acid/peptide transporter {ECO:0000313|EMBL:EKE75376.1}; TaxID=745411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Gallaecimonas.;" source="Gallaecimonas xiamenensis 3-C-1.;"
dipeptide/tripeptide permease; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_bf_inoc_scaffold_44_curated_43
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55921..57396
DNA (1476bp) protein (492aa)
dihydroorotate dehydrogenase n=1 Tax=Xanthomonas arboricola RepID=UPI0002D9A11D
Di-tripeptide transporter {ECO:0000313|EMBL:ETC90007.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
di-tripeptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_bf_inoc_scaffold_44_curated_44
unknown

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58186..58581
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_45
unknown

Not on your lists

comp(58576..58851)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_46
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59154..61604
DNA (2451bp) protein (817aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI000365C75E
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KJS29803.1}; TaxID=1629708 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
type I restriction-modification protein subunit M
SCNpilot_bf_inoc_scaffold_44_curated_47
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

61601..62941
DNA (1341bp) protein (447aa)
restriction endonuclease S subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
hypothetical protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI000367A65F
Tax=BJP_08E140C01_Clostridiales_46_19
SCNpilot_bf_inoc_scaffold_44_curated_48
Aeromonas sp. L_1B5_3, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62938..63951
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Methylobacter sp. UW 659-2-H10 RepID=UPI00036B9210
Contig_86, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ77672.1}; TaxID=1588629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. L_1B5_3.;"
Filamentation induced by cAMP protein Fic
SCNpilot_bf_inoc_scaffold_44_curated_49
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63948..67109
DNA (3162bp) protein (1054aa)
HsdR family type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI000364E5E9
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_bf_inoc_scaffold_44_curated_50
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67102..67827
DNA (726bp) protein (242aa)
metal-dependent hydrolase n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2ADF2
hypothetical protein; K07043
Uncharacterized protein {ECO:0000313|EMBL:ADE14217.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_bf_inoc_scaffold_44_curated_51
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

67993..71664
DNA (3672bp) protein (1224aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6JFF8_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KEP24179.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_52
unknown

Not on your lists

comp(71808..73319)
DNA (1512bp) protein (504aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_44_curated_53
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

73898..75175
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI0003664EBE
Putative uncharacterized protein {ECO:0000313|EMBL:EEP72490.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_44_curated_54
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75345..75794)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374FFB8
MarR family transcriptional regulator {ECO:0000313|EMBL:GAN45694.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
transcriptional regulator
SCNpilot_bf_inoc_scaffold_44_curated_55
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75872..76957
DNA (1086bp) protein (362aa)
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5B567
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_44_curated_56
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77016..78317
DNA (1302bp) protein (434aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate 1,2-dioxygenase; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
homogentisate 1,2-dioxygenase (EC:1.13.11.5); K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5]
homogentisate 1,2-dioxygenase n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E57E2
SCNpilot_bf_inoc_scaffold_44_curated_57
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78337..79338
DNA (1002bp) protein (334aa)
Fumarylacetoacetate hydrolase family protein {ECO:0000313|EMBL:EED39428.1}; EC=3.7.1.2 {ECO:0000313|EMBL:EED39428.1};; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
Fumarylacetoacetate hydrolase family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L160_9GAMM
fumarylacetoacetate (FAA) hydrolase
SCNpilot_bf_inoc_scaffold_44_curated_58
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79724..80395
DNA (672bp) protein (224aa)
maleylacetoacetate isomerase; K01800 maleylacetoacetate isomerase [EC:5.2.1.2]
Maleylacetoacetate isomerase n=2 Tax=mine drainage metagenome RepID=T0ZTL6_9ZZZZ
Maleylacetoacetate isomerase {ECO:0000313|EMBL:GAN45674.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_44_curated_59
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80463..82838
DNA (2376bp) protein (792aa)
DNA-binding protein with winged-HTH domain n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y8R9_THIV6
Transcriptional regulator {ECO:0000313|EMBL:KGQ17969.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
DNA-binding protein
SCNpilot_bf_inoc_scaffold_44_curated_60

Not on your lists

82991..85312
DNA (2322bp) protein (774aa)
hypothetical protein n=1 Tax=Cloacimonetes bacterium SCGC AAA252-N05 RepID=UPI0003671FE9
peptidase families S8 and S53 domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AIA11867.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 31-60 of 512 in total

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