ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_bf_inoc_scaffold_44_curated_177

Organism: scnpilot_dereplicated_Xanthomonadales_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(218718..219188)

Top 3 Functional Annotations

Value Algorithm Source
Fimbrial protein (Pilin) (Strain P1) (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6PM22_9ZZZZ similarity UNIREF
DB: UNIREF100
  • Identity: 57.4
  • Coverage: 141.0
  • Bit_score: 155
  • Evalue 4.80e-35
Fimbrial protein (Pilin) (Strain P1) (Modular protein) {ECO:0000313|EMBL:CBH95974.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.4
  • Coverage: 141.0
  • Bit_score: 155
  • Evalue 6.80e-35
pilin; K02650 type IV pilus assembly protein PilA similarity KEGG
DB: KEGG
  • Identity: 56.1
  • Coverage: 148.0
  • Bit_score: 151
  • Evalue 2.90e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

mine drainage metagenome

Sequences

DNA sequence
Length: 471
ATGAACAGCATGCTCCCGTCTCCGCGCCGCCACACCGGATTCACGCTGATCGAGCTGATGATCGTCGTGGCGATCATCGCGATACTCGCGGCCATCGCACTGCCTTCCTACCACGACTACGTCGTGCGCACCCAAGTCGAGGAATGCGGCATCCTGGCCAGCGGCGCAAAGACCGCGGTCGCCGAGACCCTGTCCAATACCGGCGTGCTGCCGGCCAGCAATACCGTCGCGGGACTGCCGGCGGCGGCCGACATCGTCGGCAAATACATCAGCGCGGTGACCGTCGTCAACGGCGACATCGTCTGCACGTATTCCAGCACGGCTCCACGGCGCGCGAACGCCCTGATCAACAATCTCACCATGACCCTGCACCCGACGTATTCGACGACGGGCGGCAGCGTGGCATGGACGTGTTCGGCCACCGTGCCGCAGAAGTTCCTCCCGACGATCTGCCGCACCGGCCAGAACTGA
PROTEIN sequence
Length: 157
MNSMLPSPRRHTGFTLIELMIVVAIIAILAAIALPSYHDYVVRTQVEECGILASGAKTAVAETLSNTGVLPASNTVAGLPAAADIVGKYISAVTVVNGDIVCTYSSTAPRRANALINNLTMTLHPTYSTTGGSVAWTCSATVPQKFLPTICRTGQN*