ggKbase home page

SCNpilot_BF_INOC_scaffold_1141_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1141_curated_1
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(881..1837)
DNA (957bp) protein (319aa)
Acetyl xylan esterase n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D060_PAESJ rbh
acetyl xylan esterase rbh
Acetyl xylan esterase {ECO:0000313|EMBL:ACT01609.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
SCNpilot_BF_INOC_scaffold_1141_curated_2
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1901..2137)
DNA (237bp) protein (79aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HWI0_9FIRM
50S rRNA methyltransferase
SCNpilot_BF_INOC_scaffold_1141_curated_3
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2363..3145)
DNA (783bp) protein (261aa)
Metallo-beta-lactamase domain protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XWS0_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDA19085.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
putative metal dependent hydrolase
SCNpilot_BF_INOC_scaffold_1141_curated_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3363..4748)
DNA (1386bp) protein (462aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
murA3; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 (EC:2.5.1.7) rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECG4_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1141_curated_5
unknown

Not on your lists

comp(5422..5844)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1141_curated_6
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5971..6303)
DNA (333bp) protein (111aa)
argS; Arginine-tRNA ligase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Clostridium sp. CAG:964 RepID=R6ULQ6_9CLOT
Suspect SCG annotation. See neighboring gene [SCNpilot_BF_INOC_scaffold_1141_curated_7].
Arginine--tRNA ligase {ECO:0000313|EMBL:CDC82934.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
SCNpilot_BF_INOC_scaffold_1141_curated_7
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6300..7607)
DNA (1308bp) protein (436aa)
argS; Arginine-tRNA ligase (EC:6.1.1.19) rbh
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Arginine--tRNA ligase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N7L3_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1141_curated_8
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7607..8032)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LLF9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ25047.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1141_curated_9
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8059..8871)
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R155_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1141_curated_10
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(9000..11459)
DNA (2460bp) protein (820aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI0003829D65
glycoside hydrolase family protein
Tax=CG_Ignavi_01
SCNpilot_BF_INOC_scaffold_1141_curated_11
unknown

Not on your lists

comp(11606..12091)
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1141_curated_12
unknown

Not on your lists

comp(12088..12903)
DNA (816bp) protein (272aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1141_curated_13
unknown

Not on your lists

comp(13172..13291)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1141_curated_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13292..13849)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EE38_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG30386.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1141_curated_15
unknown

Not on your lists

14099..14254
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1141_curated_16
unknown

Not on your lists

comp(14299..14610)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1141_curated_17
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14758..14928)
DNA (171bp) protein (57aa)
Ribbon-helix-helix , copG family protein n=15 Tax=Clostridium difficile RepID=T2XFW8_CLODI
Ribbon-helix-helix , copG family protein {ECO:0000313|EMBL:KFM93515.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1141_curated_18
Bacillus selenatarsenatis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15158..16165)
DNA (1008bp) protein (336aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:GAM12027.1}; EC=5.1.3.2 {ECO:0000313|EMBL:GAM12027.1};; TaxID=1321606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus selenatarsenatis SF-1.;"
UDP-glucose 4-epimerase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAI2_9CLOT rbh
galE; UDP-glucose 4-epimerase rbh
SCNpilot_BF_INOC_scaffold_1141_curated_19
Sanguibacteroides justesenii, Sanguibacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16312..16971
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZSW0_9PORP
Phosphohydrolase {ECO:0000313|EMBL:KIO44062.1}; TaxID=1547597 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Sanguibacteroides.;" source="Sanguibacteroides justesenii.;"
metal dependent phosphohydrolase
SCNpilot_BF_INOC_scaffold_1141_curated_20
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17173..17865
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VSD9_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDO61970.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1141_curated_21
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17891..18898
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:217 RepID=R6ITG7_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDB52565.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1141_curated_22
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19221..20276
DNA (1056bp) protein (352aa)
Putative uncharacterized protein n=1 Tax=Treponema saccharophilum DSM 2985 RepID=H7EL37_9SPIO
Cell surface protein {ECO:0000313|EMBL:EXM39679.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
Ig domain-containing protein
SCNpilot_BF_INOC_scaffold_1141_curated_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20623..21585
DNA (963bp) protein (321aa)
Lipase n=2 Tax=Clostridium butyricum RepID=B1QT95_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ33514.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
esterase/lipase
SCNpilot_BF_INOC_scaffold_1141_curated_24
unknown

Not on your lists

22477..22719
DNA (243bp) protein (81aa)

This feature has no annotations

Displaying 24 items

View Taxonomy