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SCNpilot_BF_INOC_scaffold_1528_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1528_curated_1
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..3548
DNA (3546bp) protein (1182aa)
Cysteine protease n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NU55_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM70043.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
SCNpilot_BF_INOC_scaffold_1528_curated_2
Paenibacillus pini, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3718..5817)
DNA (2100bp) protein (700aa)
Uncharacterized protein n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GFJ5_9BACL
Parallel beta-helix repeat {ECO:0000313|EMBL:GAF07670.1}; TaxID=1236976 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus pini JCM 16418.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1528_curated_3
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6026..8059)
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GFJ5_9BACL rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AIQ58808.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
SCNpilot_BF_INOC_scaffold_1528_curated_4
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8244..8852)
DNA (609bp) protein (203aa)
Recombination protein RecR n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M3B8_9FIRM rbh
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
recombination protein RecR
SCNpilot_BF_INOC_scaffold_1528_curated_5
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8884..9225)
DNA (342bp) protein (114aa)
Nucleoid-associated protein Ethha_0166 n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6M0_ETHHY
hypothetical protein
Nucleoid-associated protein Ethha_0166 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_1528_curated_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9294..11054)
DNA (1761bp) protein (587aa)
rnjA; Ribonuclease J 1 (EC:3.1.-.-) rbh
Ribonuclease J 1 {ECO:0000313|EMBL:CDZ23820.1}; EC=3.1.-.- {ECO:0000313|EMBL:CDZ23820.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
beta-lactamase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37EF4 rbh
SCNpilot_BF_INOC_scaffold_1528_curated_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11221..12333)
DNA (1113bp) protein (371aa)
Nucleotidyl transferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NHG6_9CLOT
Nucleotidyl transferase {ECO:0000313|EMBL:CDC11573.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
nucleotidyltransferase
SCNpilot_BF_INOC_scaffold_1528_curated_8
unknown

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12513..12740
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1528_curated_9
unknown

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13380..13649
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1528_curated_10
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13655..14101
DNA (447bp) protein (149aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
RNase HI (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C9E2_9FIRM
SCNpilot_BF_INOC_scaffold_1528_curated_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14052..15149
DNA (1098bp) protein (366aa)
birA; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor (EC:6.3.4.15) rbh
BirA bifunctional protein n=1 Tax=Clostridium perfringens E str. JGS1987 PF0_CLOPF">RepID=B1BPF0_CLOPF rbh
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
SCNpilot_BF_INOC_scaffold_1528_curated_12
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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15146..15712
DNA (567bp) protein (189aa)
BioY family protein n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MIN9_9FIRM
bioY; putative biotin transporter BioY
Tax=BJP_IG2157_Clostridiales_52_13
SCNpilot_BF_INOC_scaffold_1528_curated_13
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15753..16445)
DNA (693bp) protein (231aa)
Spore cortex-lytic enzyme n=2 Tax=Clostridium RepID=A7VSA1_9CLOT
Spore cortex-lytic enzyme {ECO:0000313|EMBL:CDC05132.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
spore cortex-lytic protein
SCNpilot_BF_INOC_scaffold_1528_curated_14
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16628..16927
DNA (300bp) protein (100aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Putative pyridoxal kinase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BAU8_9CLOT
hypothetical protein
Displaying 14 items

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