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SCNpilot_BF_INOC_scaffold_1968_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1968_curated_1
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(90..413)
DNA (324bp) protein (108aa)
Regulatory protein VanR n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HBL2_9FIRM
Regulatory protein VanR {ECO:0000313|EMBL:CCY27075.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
two-component response regulator
SCNpilot_BF_INOC_scaffold_1968_curated_2
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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993..1967
DNA (975bp) protein (325aa)
Oxidoreductase domain protein n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CTP2_PAESJ
oxidoreductase
Oxidoreductase domain protein {ECO:0000313|EMBL:ACT00673.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
SCNpilot_BF_INOC_scaffold_1968_curated_3
unknown

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comp(2030..2752)
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1968_curated_4
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2851..3840)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SCM8_9BACL
hypothetical protein
Tax=BJP_IG2069_Clostridiales_42_11
SCNpilot_BF_INOC_scaffold_1968_curated_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3830..4315)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum CFSAN002367 RepID=S8BFU6_CLOBO
Clostridium botulinum B2 450 B2_450_contig007, whole genome shotgun sequence {ECO:0000313|EMBL:KIS22681.1}; TaxID=1379739 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum B2 450.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1968_curated_6
Mogibacterium timidum, Mogibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4563..4808)
DNA (246bp) protein (82aa)
TIGR03905 family protein n=1 Tax=Mogibacterium sp. CM50 RepID=J4WEF2_9FIRM
TIGR03905 family protein {ECO:0000313|EMBL:EUC52543.1}; TaxID=1401079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis; Mogibacterium.;" source="Mogibacterium timidum ATCC 33093.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1968_curated_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4842..5264)
DNA (423bp) protein (141aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LAC3_RUMC1
FeS cluster assembly scaffold protein NifU, Clostridium type
Nitrogen fixation protein NifU {ECO:0000313|EMBL:KJF41607.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
SCNpilot_BF_INOC_scaffold_1968_curated_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5268..6587)
DNA (1320bp) protein (440aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
iscS1; Cysteine desulfurase (EC:2.8.1.7) rbh
Cysteine desulfurase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6D7_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1968_curated_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6587..6853)
DNA (267bp) protein (89aa)
Glycosyl hydrolase family 20 protein n=1 Tax=Clostridium perfringens F262 RepID=H7CUL7_CLOPF
Glycosyl hydrolase family 20 protein {ECO:0000313|EMBL:EIA17739.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
glycosyl hydrolase family 20 protein
SCNpilot_BF_INOC_scaffold_1968_curated_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6937..8391)
DNA (1455bp) protein (485aa)
Negative regulator of genetic competence ClpC/MecB n=1 Tax=Clostridium sp. MSTE9 RepID=J0N170_9CLOT rbh
Negative regulator of genetic competence ClpC/MecB {ECO:0000313|EMBL:EJF40494.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ATPase AAA-2 domain-containing protein rbh
SCNpilot_BF_INOC_scaffold_1968_curated_11
unknown

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8743..9066
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1968_curated_12
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9382..10398)
DNA (1017bp) protein (339aa)
putative ATP:guanido phosphotransferase TTE2328 (EC:2.7.3.-) rbh
ATP:guanido phosphotransferase C-terminal catalytic domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NFC8_9CLOT rbh
ATP:guanido phosphotransferase C-terminal catalytic domain protein {ECO:0000313|EMBL:CDC09860.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
SCNpilot_BF_INOC_scaffold_1968_curated_13
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10391..10906)
DNA (516bp) protein (172aa)
UvrB/UvrC domain protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6UEU8_9CLOT
UvrB/UvrC domain protein {ECO:0000313|EMBL:CDC78636.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
Uncharacterized protein with conserved CXXC pairs
SCNpilot_BF_INOC_scaffold_1968_curated_14
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11022..11474)
DNA (453bp) protein (151aa)
Transcriptional repressor, CtsR n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6R6_ETHHY
transcriptional repressor CtsR
Transcriptional repressor, CtsR {ECO:0000313|EMBL:ADU25799.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_1968_curated_15
Prevotella sp. CAG:386, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11924..13771)
DNA (1848bp) protein (616aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:386 RepID=R6PRP3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDC27038.1}; TaxID=1262925 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:386.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1968_curated_16
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13895..15262)
DNA (1368bp) protein (456aa)
Putative efflux protein, MATE family n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LTD1_CLOCD rbh
putative efflux protein, MATE family rbh
Putative efflux protein, MATE family {ECO:0000313|EMBL:AEV68378.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
SCNpilot_BF_INOC_scaffold_1968_curated_17
unknown

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15457..15807
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1968_curated_18
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16032..16967
DNA (936bp) protein (312aa)
S1 RNA binding domain protein n=2 Tax=Clostridium RepID=A7VWH3_9CLOT rbh
S1 RNA binding domain protein {ECO:0000313|EMBL:EDO60120.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Ribosomal protein S1 rbh
SCNpilot_BF_INOC_scaffold_1968_curated_19
Paenisporosarcina sp. HGH0030, Paenisporosarcina, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17159..17584)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Paenisporosarcina sp. HGH0030 RepID=S2XI07_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EPD49590.1}; TaxID=1078085 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Paenisporosarcina.;" source="Paenisporosarcina sp. HGH0030.;"
flagellin
Displaying 19 items

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