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SCNpilot_BF_INOC_scaffold_2555_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2555_curated_1
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..509)
DNA (507bp) protein (169aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TKI9_ALKMQ
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:CDZ23418.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2555_curated_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(559..1947)
DNA (1389bp) protein (463aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
asnS; Asparagine-tRNA ligase (EC:6.1.1.22) rbh
Asparagine--tRNA ligase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDV1_9FIRM rbh
SCNpilot_BF_INOC_scaffold_2555_curated_3
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1999..4965)
DNA (2967bp) protein (989aa)
Predicted membrane protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FBK4_9FIRM rbh
Predicted membrane protein {ECO:0000313|EMBL:CDE12225.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Predicted membrane protein rbh
SCNpilot_BF_INOC_scaffold_2555_curated_4
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4978..5427)
DNA (450bp) protein (150aa)
Bacterial membrane protein YfhO n=1 Tax=Eubacterium sp. CAG:603 RepID=R5P8Q0_9FIRM
Bacterial membrane protein YfhO {ECO:0000313|EMBL:CCZ05392.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
cell wall teichoic acid glycosylation protein
SCNpilot_BF_INOC_scaffold_2555_curated_5
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5420..6556)
DNA (1137bp) protein (379aa)
Glycosyl transferase group 2 family n=1 Tax=Roseburia sp. CAG:303 RepID=R7IQL5_9FIRM rbh
Glycosyl transferase group 2 family {ECO:0000313|EMBL:CDC20494.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
Glycosyltransferases involved in cell wall biogenesis rbh
SCNpilot_BF_INOC_scaffold_2555_curated_trna_1
unknown

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comp(6643..6729)
DNA (87bp)
transferRNA Ser
SCNpilot_BF_INOC_scaffold_2555_curated_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7239..7712
DNA (474bp) protein (158aa)
Peptidase S14 ClpP n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6W2_ETHHY
tepA; Translocation-enhancing protein TepA
Translocation-enhancing protein TepA {ECO:0000313|EMBL:CDZ24007.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2555_curated_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7717..7932
DNA (216bp) protein (72aa)
Endopeptidase Clp {ECO:0000313|EMBL:EEG29938.1}; EC=3.4.21.92 {ECO:0000313|EMBL:EEG29938.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
Endopeptidase Clp n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF35_9CLOT
SCNpilot_BF_INOC_scaffold_2555_curated_8
unknown

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7932..8138
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2555_curated_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8249..9055
DNA (807bp) protein (269aa)
FtsK/SpoIIIE family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWI7_9CLOT
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:EDO60134.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
ftsK; DNA translocase FtsK
Displaying 10 items

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