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SCNpilot_BF_INOC_scaffold_1458_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1458_curated_1
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

103..762
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C704_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR25058.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1458_curated_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(778..1791)
DNA (1014bp) protein (338aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54) rbh
3-deoxy-7-phosphoheptulonate synthase n=2 Tax=Clostridium RepID=A7VSE8_9CLOT rbh
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:CDC06184.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
SCNpilot_BF_INOC_scaffold_1458_curated_3
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2046..3791
DNA (1746bp) protein (582aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-) rbh
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CGS6_9FIRM rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA72039.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
SCNpilot_BF_INOC_scaffold_1458_curated_4
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3794..5572
DNA (1779bp) protein (593aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Paenibacillus sanguinis RepID=UPI000368CF1B rbh
multidrug ABC transporter ATP-binding protein rbh
ABC transporter family protein {ECO:0000313|EMBL:KFN05726.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
SCNpilot_BF_INOC_scaffold_1458_curated_5
GWD2_Clostridiales_32_59_curated, Clostridiales, Bacteria

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comp(5822..6445)
DNA (624bp) protein (208aa)
Spore coat assembly protein SafA/uncharacterized protein, YkwD family id=1801148 bin=GWD2_Clostridiales_32_59 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65
Allergen V5/Tpx-1 related-like protein
Tax=GWD2_Clostridiales_32_59_curated
SCNpilot_BF_INOC_scaffold_1458_curated_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6538..7602)
DNA (1065bp) protein (355aa)
pepQ; Xaa-Pro dipeptidase (EC:3.4.11.9) rbh
Putative Xaa-Pro dipeptidase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N296_9FIRM rbh
Putative Xaa-Pro dipeptidase {ECO:0000313|EMBL:CCY91711.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
SCNpilot_BF_INOC_scaffold_1458_curated_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7586..8350)
DNA (765bp) protein (255aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
putative Baf family transcriptional acitvator (EC:2.7.1.33)
Type III pantothenate kinase n=2 Tax=Clostridium RepID=A7VVF8_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1458_curated_8
Thermoanaerobacter ethanolicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8368..8772)
DNA (405bp) protein (135aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZUH2_THEET
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EGD52228.1}; TaxID=509192 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter ethanolicus JW 200.;"
bleomycin resistance protein
SCNpilot_BF_INOC_scaffold_1458_curated_9
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8883..10433
DNA (1551bp) protein (517aa)
Mg chelatase, subunit ChlI n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8L5_ETHHY rbh
yifB; putative protein YifB rbh
Uncharacterized protein {ECO:0000313|EMBL:CDZ24059.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1458_curated_10
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10569..12503
DNA (1935bp) protein (645aa)
Aconitase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R5D6_9CLOT rbh
Aconitase {ECO:0000313|EMBL:CDC38316.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
aconitate hydratase rbh
SCNpilot_BF_INOC_scaffold_1458_curated_11
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12925..13713
DNA (789bp) protein (263aa)
Dehydrogenase, isocitrate/isopropylmalate family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DMU7_CLOS4 rbh
Dehydrogenase, isocitrate/isopropylmalate family {ECO:0000313|EMBL:ERI98130.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1458_curated_12
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13747..14403
DNA (657bp) protein (219aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MHD0_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Rex DNA-binding domain-containing protein
SCNpilot_BF_INOC_scaffold_1458_curated_13
unknown

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comp(14728..15294)
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1458_curated_14
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(15461..15685)
DNA (225bp) protein (75aa)
Putative uncharacterized protein id=3604029 bin=GWF2_Clostridiales_36_10 species=Collinsella tanakaei genus=Collinsella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Tax=GWF2_Clostridiales_36_10_curated
SCNpilot_BF_INOC_scaffold_1458_curated_15
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(15698..16204)
DNA (507bp) protein (169aa)
Putative uncharacterized protein id=4182983 bin=GWF2_Clostridiales_38_85 species=Paenibacillus vortex genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
SCNpilot_BF_INOC_scaffold_1458_curated_16
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16427..17089
DNA (663bp) protein (221aa)
MgtC/SapB transporter n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UTY7_CLOBO
MgtC/SapB transporter {ECO:0000313|EMBL:EES51173.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
MgtC/SapB transporter
SCNpilot_BF_INOC_scaffold_1458_curated_17
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17123..17425)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002E01171
Uncharacterized protein {ECO:0000313|EMBL:KJS17427.1}; TaxID=1629717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4b.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1458_curated_18
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17711..18334
DNA (624bp) protein (208aa)
Transcriptional regulator n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D0U0_DESAJ
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFM39414.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
SCNpilot_BF_INOC_scaffold_1458_curated_19
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18663..19013)
DNA (351bp) protein (117aa)
Transcriptional regulator Spx/MgsR family n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6WIR5_9FIRM
Transcriptional regulator Spx/MgsR family {ECO:0000313|EMBL:CDD10998.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
arsenate reductase-like protein
SCNpilot_BF_INOC_scaffold_1458_curated_20

Not on your lists

comp(19216..19383)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NKI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AHF25449.1}; TaxID=1393462 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig1586.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1458_curated_21
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19396..20271)
DNA (876bp) protein (292aa)
Ferrous iron transporter B n=8 Tax=Clostridium clostridioforme RepID=G5I5K1_9CLOT rbh
Ferrous iron transporter B {ECO:0000313|EMBL:ENZ60237.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ferrous iron transport protein B rbh
SCNpilot_BF_INOC_scaffold_1458_curated_22
unknown

Not on your lists

20890..21342
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1458_curated_23
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21639..21860)
DNA (222bp) protein (74aa)
Uncharacterized protein n=17 Tax=Clostridium RepID=A8RH10_9CLOT
Ferrous iron transporter A {ECO:0000313|EMBL:ENZ32489.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Fe2+ transport system protein A
SCNpilot_BF_INOC_scaffold_1458_curated_24
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

comp(21871..22080)
DNA (210bp) protein (70aa)
FeoA family protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R661_9FIRM
FeoA family protein {ECO:0000313|EMBL:CCZ36043.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Fe2+ transport system protein A
SCNpilot_BF_INOC_scaffold_1458_curated_25
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22268..22639
DNA (372bp) protein (124aa)
Transcriptional regulator n=3 Tax=Clostridium bolteae RepID=N9YXV9_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:ENZ32491.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Transcriptional regulator
SCNpilot_BF_INOC_scaffold_1458_curated_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23566..24375
DNA (810bp) protein (270aa)
Uncharacterized protein (Fragment) n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZEK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ08391.1}; Flags: Fragment;; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1458_curated_trna_2
unknown

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comp(26263..26335)
DNA (73bp)
transferRNA Ala
SCNpilot_BF_INOC_scaffold_1458_curated_trna_1
unknown

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comp(26446..26519)
DNA (74bp)
transferRNA Ile
SCNpilot_BF_INOC_scaffold_1458_curated_16S_1
unknown

Not on your lists

comp(26674..28175)
DNA (1502bp)
16S ribosomal RNA (16S rRNA)
SCNpilot_BF_INOC_scaffold_1458_curated_27
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26773..27033)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P027_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24020.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Displaying items 1-30 of 31 in total

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