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SCNpilot_BF_INOC_scaffold_5204_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_5204_curated_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1098
DNA (1098bp) protein (366aa)
GGDEF domain protein n=2 Tax=Clostridium botulinum RepID=M1ZVA6_CLOBO
GGDEF domain protein {ECO:0000313|EMBL:EKN40570.1}; TaxID=1232189 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CFSAN001627.;"
putative diguanylate cyclase
SCNpilot_BF_INOC_scaffold_5204_curated_2
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1201..1866
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MWX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY89851.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Zn-dependent proteases
SCNpilot_BF_INOC_scaffold_5204_curated_3
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1879..2622
DNA (744bp) protein (248aa)
ScpA/B protein n=2 Tax=Clostridium RepID=A7VPH0_9CLOT
ScpA/B protein {ECO:0000313|EMBL:EDO62857.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
condensin subunit ScpA
SCNpilot_BF_INOC_scaffold_5204_curated_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2591..3148
DNA (558bp) protein (186aa)
Segregation and condensation protein B n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPG9_9CLOT
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_5204_curated_5
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3162..3746
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E5F0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91841.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_5204_curated_6
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3772..4164
DNA (393bp) protein (131aa)
Sporulation protein YtfJ n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MWX9_9FIRM
Sporulation protein YtfJ {ECO:0000313|EMBL:CCY89856.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_5204_curated_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4349..5323
DNA (975bp) protein (325aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPG6_9CLOT rbh
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDC04036.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
SCNpilot_BF_INOC_scaffold_5204_curated_8
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5356..6126
DNA (771bp) protein (257aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.12 5.4.99.-)
Pseudouridine synthase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N6U9_9CLOT rbh
SCNpilot_BF_INOC_scaffold_5204_curated_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6196..6450
DNA (255bp) protein (85aa)
Preprotein translocase, SecG subunit n=2 Tax=Clostridium RepID=A7VVJ5_9CLOT
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EDO60995.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
preprotein translocase subunit SecG
SCNpilot_BF_INOC_scaffold_5204_curated_10
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6582..6848
DNA (267bp) protein (89aa)
Pro-sigmaK processing inhibitor BofA n=2 Tax=Clostridium RepID=A7VVJ9_9CLOT
Pro-sigmaK processing inhibitor BofA {ECO:0000313|EMBL:EDO60999.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
putative membrane protein
SCNpilot_BF_INOC_scaffold_5204_curated_11
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6966..8495
DNA (1530bp) protein (510aa)
single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-) rbh
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MGX3_9FIRM rbh
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:CCY90955.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
Displaying 11 items

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