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SCNpilot_BF_INOC_scaffold_1207_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1207_curated_1
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..869
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EI17_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM67733.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
SCNpilot_BF_INOC_scaffold_1207_curated_2
unknown

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884..1288
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1207_curated_3
unknown

Not on your lists

1484..1765
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1207_curated_4
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2187..2969
DNA (783bp) protein (261aa)
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_1207_curated_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3348..3701
DNA (354bp) protein (118aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E918_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG32035.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
GntR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1207_curated_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3763..4464
DNA (702bp) protein (234aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E917_9CLOT rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG32034.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ABC transporter rbh
SCNpilot_BF_INOC_scaffold_1207_curated_7
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4458..5285
DNA (828bp) protein (276aa)
Putative ABC transporter, peremase protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I3C2_CLOCE
ABC transporter permease
Putative ABC transporter, peremase protein {ECO:0000313|EMBL:ACL76265.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
SCNpilot_BF_INOC_scaffold_1207_curated_8
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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5407..6204
DNA (798bp) protein (266aa)
Polysaccharide deacetylase n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S4K3_CALKI rbh
polysaccharide deacetylase rbh
Polysaccharide deacetylase {ECO:0000313|EMBL:ADQ41406.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 /; I77R1B).;"
SCNpilot_BF_INOC_scaffold_1207_curated_9
Haloplasma contractile, Haloplasma, Haloplasmatales, Bacteria

Not on your lists

6303..6578
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Haloplasma contractile SSD-17B RepID=U2DT08_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERJ11627.1}; TaxID=1033810 species="Bacteria; Haloplasmatales; Haloplasmataceae; Haloplasma.;" source="Haloplasma contractile SSD-17B.;"
SCNpilot_BF_INOC_scaffold_1207_curated_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6711..7196
DNA (486bp) protein (162aa)
Ribosome maturation factor RimP n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IBU6_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1207_curated_11
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7202..8254
DNA (1053bp) protein (351aa)
Transcription termination factor NusA n=3 Tax=root RepID=R5MK70_9FIRM rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
transcription termination factor NusA rbh
SCNpilot_BF_INOC_scaffold_1207_curated_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8314..8580
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42879.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1207_curated_13
Salinicoccus roseus, Salinicoccus, Bacillales, Bacilli, Firmicutes, Bacteria

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8573..8857
DNA (285bp) protein (95aa)
Ribosomal protein L7Ae n=1 Tax=Clostridium leptum CAG:27 RepID=R6N8K7_9CLOT
50S ribosomal protein L7ae {ECO:0000313|EMBL:KIH71025.1}; TaxID=45670 species="Bacteria; Firmicutes; Bacilli; Bacillales; Salinicoccus.;" source="Salinicoccus roseus.;"
Ribosomal protein HS6-type (S12/L30/L7a)
SCNpilot_BF_INOC_scaffold_1207_curated_14
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8865..11282
DNA (2418bp) protein (806aa)
Translation initiation factor IF-2 n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYG4_9FIRM rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
translation initiation factor IF-2 rbh
SCNpilot_BF_INOC_scaffold_1207_curated_15
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11440..11787
DNA (348bp) protein (116aa)
Ribosome-binding factor A n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LCE5_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
ribosome-binding factor A
SCNpilot_BF_INOC_scaffold_1207_curated_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11906..12856
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000381258C rbh
DHHA1 domain protein {ECO:0000313|EMBL:CDC43989.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
conserved hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1207_curated_17
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12857..13735
DNA (879bp) protein (293aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8T6_9FIRM
tRNA pseudouridine synthase B
SCNpilot_BF_INOC_scaffold_1207_curated_18
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13749..14648
DNA (900bp) protein (300aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Clostridium sp. CAG:352 RepID=R6RCU3_9CLOT
riboflavin biosynthesis protein RibF
SCNpilot_BF_INOC_scaffold_1207_curated_19
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14774..15262)
DNA (489bp) protein (163aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NSQ8_9FIRM
SCNpilot_BF_INOC_scaffold_1207_curated_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15290..16549)
DNA (1260bp) protein (420aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (EC:4.2.1.33) rbh
3-isopropylmalate dehydratase large subunit n=1 Tax=Clostridium sp. MSTE9 RepID=J0MYB3_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1207_curated_21
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16579..18147)
DNA (1569bp) protein (523aa)
putative AIPM/Hcit synthase family transferase aq_356 (EC:2.3.3.-) rbh
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VNV2_9CLOT rbh
2-isopropylmalate synthase/homocitrate synthase family protein {ECO:0000313|EMBL:EDO63012.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
SCNpilot_BF_INOC_scaffold_1207_curated_22
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18159..18665)
DNA (507bp) protein (169aa)
Acetolactate synthase small subunit n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FSI4_9FIRM
Acetolactate synthase small subunit {ECO:0000313|EMBL:CDB12419.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
acetolactate synthase small subunit
SCNpilot_BF_INOC_scaffold_1207_curated_23
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18678..20342)
DNA (1665bp) protein (555aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
acetolactate synthase, large subunit (EC:2.2.1.6) rbh
Acetolactate synthase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VNV4_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1207_curated_trna_1
unknown

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comp(20523..20595)
DNA (73bp)
transferRNA Gly
SCNpilot_BF_INOC_scaffold_1207_curated_24
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20973..22208)
DNA (1236bp) protein (412aa)
Oxidoreductase n=1 Tax=Caloramator australicus RC3 RepID=I7J4S4_9CLOT
Oxidoreductase {ECO:0000313|EMBL:CCJ32951.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1207_curated_25
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22500..23192
DNA (693bp) protein (231aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5MJ62_9FIRM rbh
Response regulator receiver domain protein {ECO:0000313|EMBL:CDC11799.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
winged helix family two component transcriptional regulator rbh
SCNpilot_BF_INOC_scaffold_1207_curated_26
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23244..24233
DNA (990bp) protein (330aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYH8_9CLOT
integral membrane sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_1207_curated_27
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24190..24627
DNA (438bp) protein (146aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYH8_9CLOT
integral membrane sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_1207_curated_28
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24614..26164
DNA (1551bp) protein (517aa)
Trypsin n=1 Tax=Clostridium sp. MSTE9 RepID=J0N443_9CLOT
Trypsin {ECO:0000313|EMBL:EJF41589.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SCNpilot_BF_INOC_scaffold_1207_curated_29
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26344..26973
DNA (630bp) protein (210aa)
Sensory box/ggdef family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPY5_NEPCE
Sensory box/ggdef family protein {ECO:0000313|EMBL:EAR62746.1}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter caesariensis.;"
Displaying items 1-30 of 31 in total

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