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SCNpilot_BF_INOC_scaffold_4032_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_4032_curated_1
Paenibacillus pini, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

409..1002
DNA (594bp) protein (198aa)
Transcriptional regulator with cupin sensor, AraC family n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNR2_CELLD
Transcriptional regulator {ECO:0000313|EMBL:GAF07689.1}; TaxID=1236976 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus pini JCM 16418.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_4032_curated_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1053..2699)
DNA (1647bp) protein (549aa)
RNA polymerase sigma factor, sigma-70 family n=2 Tax=root RepID=D4MHY3_9FIRM rbh
RNA polymerase sigma factor, sigma-70 family rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBL33366.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
SCNpilot_BF_INOC_scaffold_4032_curated_3
unknown

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comp(2855..3133)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_4032_curated_4
Lysinibacillus varians, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3317..3532
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Lysinibacillus boronitolerans RepID=UPI0003033BFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHN22027.1}; TaxID=1145276 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus varians.;"
SCNpilot_BF_INOC_scaffold_4032_curated_5
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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3552..3764
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XDV5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY94073.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_4032_curated_6
Lysinibacillus varians, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3789..4004
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI000376892D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHN22027.1}; TaxID=1145276 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus varians.;"
SCNpilot_BF_INOC_scaffold_4032_curated_7
unknown

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4060..4197
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_4032_curated_8
unknown

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4151..4591
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_4032_curated_trna_1
unknown

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comp(4366..4449)
DNA (84bp)
transferRNA Leu
SCNpilot_BF_INOC_scaffold_4032_curated_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4545..5081)
DNA (537bp) protein (179aa)
Fibronectin-binding protein n=2 Tax=Clostridium RepID=A7VVS0_9CLOT
Fibronectin-binding protein {ECO:0000313|EMBL:CDC05907.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
fibronectin-binding A domain-containing protein
SCNpilot_BF_INOC_scaffold_4032_curated_10
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6221..6988)
DNA (768bp) protein (256aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Clostridium leptum CAG:27 RepID=R6N1N6_9CLOT
conserved hypothetical protein TIGR00486
SCNpilot_BF_INOC_scaffold_4032_curated_11
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6985..7677)
DNA (693bp) protein (231aa)
PF04816 family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H3R8_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24045.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_4032_curated_12
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7766..8146)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U7Q0_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU28173.1}; Flags: Precursor;; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_4032_curated_13
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8148..8828)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R3Y1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC39884.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_4032_curated_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9040..10110)
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85) rbh
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium leptum CAG:27 RepID=R6P371_9CLOT rbh
SCNpilot_BF_INOC_scaffold_4032_curated_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10253..10846)
DNA (594bp) protein (198aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
leuA1; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003638400
SCNpilot_BF_INOC_scaffold_4032_curated_16
unknown

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10954..11238
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_4032_curated_17
Rothia mucilaginosa, Rothia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11235..11477
DNA (243bp) protein (81aa)
FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Rothia mucilaginosa (strain DY-18) RepID=D2NT81_ROTMD
FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:BAI64857.1}; TaxID=680646 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia.;" source="Rothia mucilaginosa (strain DY-18) (Stomatococcus mucilaginosus).;"
SCNpilot_BF_INOC_scaffold_4032_curated_18
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(12070..12480)
DNA (411bp) protein (137aa)
Glucose-inhibited division protein A id=2852342 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
tat (twin-arginine translocation) pathway signal sequence
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_BF_INOC_scaffold_4032_curated_19
unknown

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12680..13342
DNA (663bp) protein (221aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_4032_curated_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13439..13969)
DNA (531bp) protein (177aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W0Y0_DYAFD
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ACT95435.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Displaying 21 items

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