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SCNpilot_BF_INOC_scaffold_2458_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2458_curated_1
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..673)
DNA (672bp) protein (224aa)
coenzyme F390 synthetase (EC:6.2.1.30) rbh
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Coenzyme F390 synthetase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LT98_CLOCD rbh
SCNpilot_BF_INOC_scaffold_2458_curated_2
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(901..1491)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PC74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS10829.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2458_curated_3
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1829..2071
DNA (243bp) protein (81aa)
NUDIX hydrolase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SQY8_CLOC7
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADL50276.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
SCNpilot_BF_INOC_scaffold_2458_curated_4
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2123..2608
DNA (486bp) protein (162aa)
heat shock protein Hsp20 n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E304D3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24028.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2458_curated_5
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2657..3643)
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R6B6_CLOSW rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS18745.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_2458_curated_6
unknown

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comp(3692..3871)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2458_curated_7
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4094..5203)
DNA (1110bp) protein (370aa)
Dockerin type I repeat protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VEE9_9CLOT
Dockerin type I repeat protein {ECO:0000313|EMBL:EDO58152.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
SCNpilot_BF_INOC_scaffold_2458_curated_8
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5296..6177)
DNA (882bp) protein (294aa)
Chitin binding domain protein n=2 Tax=Paenibacillus RepID=F5LIN4_9BACL
Chitin-binding protein {ECO:0000313|EMBL:KGP81438.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
S-layer protein
SCNpilot_BF_INOC_scaffold_2458_curated_9
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(6458..7129)
DNA (672bp) protein (224aa)
ABC transporter, ATP-binding protein Vexp2 id=4448700 bin=GWF2_Clostridiales_38_85 species=Erysipelotrichaceae bacterium 3_1_53 genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
antimicrobial peptide ABC transporter ATPase
Tax=GWF2_Clostridiales_38_85_curated
SCNpilot_BF_INOC_scaffold_2458_curated_10
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7144..8700)
DNA (1557bp) protein (519aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VMI4_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:KEZ85055.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
antimicrobial peptide ABC transporter permease rbh
SCNpilot_BF_INOC_scaffold_2458_curated_11
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8820..10295)
DNA (1476bp) protein (492aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Signal transduction histidine kinase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FU91_9CLOT rbh
signal transduction histidine kinase rbh
SCNpilot_BF_INOC_scaffold_2458_curated_12
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(10273..10965)
DNA (693bp) protein (231aa)
Two-component response regulator n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TWW4_9FIRM rbh
Two-component response regulator {ECO:0000313|EMBL:CDC72396.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
transcriptional regulator rbh
SCNpilot_BF_INOC_scaffold_2458_curated_13
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11859..12218
DNA (360bp) protein (120aa)
Transcriptional repressor, CopY family n=7 Tax=Clostridium thermocellum RepID=A3DCD5_CLOTH
CopY family transcriptional repressor
Transcriptional repressor, CopY family {ECO:0000313|EMBL:ABN51614.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_BF_INOC_scaffold_2458_curated_14
unknown

Not on your lists

comp(12561..12752)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2458_curated_15
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13682..14089)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DVU1_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERJ00624.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2458_curated_16
Sanguibacteroides justesenii, Sanguibacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14538..16235)
DNA (1698bp) protein (566aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Putative phosphoglycolate phosphatase, bacterial n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLL2_9FIRM
Phosphoglycolate phosphatase {ECO:0000313|EMBL:KIO44916.1}; TaxID=1547597 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Sanguibacteroides.;" source="Sanguibacteroides justesenii.;"
SCNpilot_BF_INOC_scaffold_2458_curated_17
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16316..17278)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI000363A78F
Uncharacterized protein {ECO:0000313|EMBL:CDD04276.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
putative membrane protein
SCNpilot_BF_INOC_scaffold_2458_curated_18
Paenibacillus sp. FSL R7-0331, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18104..19960)
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00036E670A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ51315.1}; TaxID=1536773 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-0331.;"
SCNpilot_BF_INOC_scaffold_2458_curated_19
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20155..20724)
DNA (570bp) protein (190aa)
ANTAR domain protein n=6 Tax=Clostridium thermocellum RepID=E6UMB6_CLOTL
Response regulator receiver protein {ECO:0000313|EMBL:KGP76694.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
ANTAR domain-containing protein
SCNpilot_BF_INOC_scaffold_2458_curated_20
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20804..21031)
DNA (228bp) protein (76aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
glutamate--ammonia ligase (EC:6.3.1.2)
Glutamine synthetase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEB7_9CLOT
SCNpilot_BF_INOC_scaffold_2458_curated_21
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21106..21987)
DNA (882bp) protein (294aa)
glutamine synthetase (EC:6.3.1.2) rbh
Glutamine synthetase, type I {ECO:0000313|EMBL:ADZ85917.1}; EC=6.3.1.2 {ECO:0000313|EMBL:ADZ85917.1};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Glutamine synthetase, type I n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNM8_CELLD rbh
SCNpilot_BF_INOC_scaffold_2458_curated_22
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22760..23134
DNA (375bp) protein (125aa)
Glutamine synthetase catalytic region n=1 Tax=Clostridium sp. DL-VIII RepID=G7M8S3_9CLOT
glutamine synthetase
Glutamine synthetase {ECO:0000313|EMBL:GAE90240.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
SCNpilot_BF_INOC_scaffold_2458_curated_23
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23211..24809
DNA (1599bp) protein (533aa)
Glutamine synthetase type III domain-containing protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNM1_CELLD rbh
glutamine synthetase type III domain-containing protein rbh
Glutamine synthetase type III domain-containing protein {ECO:0000313|EMBL:ADZ85910.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
SCNpilot_BF_INOC_scaffold_2458_curated_24
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24957..25871
DNA (915bp) protein (305aa)
Ammonium transporter n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TGI2_9CLOT
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
ammonium transporter
Displaying 24 items

View Taxonomy