ggKbase home page

SCNpilot_BF_INOC_scaffold_1959_curated

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1959_curated_1
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..392)
DNA (390bp) protein (130aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Anaerotruncus colihominis DSM 17241 PF91_9FIRM">RepID=B0PF91_9FIRM
SCNpilot_BF_INOC_scaffold_1959_curated_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1574..2125)
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EJF38823.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EJF38823.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hprT; Hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H0U0_9CLOT
SCNpilot_BF_INOC_scaffold_1959_curated_3
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2115..3428)
DNA (1314bp) protein (438aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8A9_9FIRM rbh
tRNA(Ile)-lysidine synthetase
SCNpilot_BF_INOC_scaffold_1959_curated_4
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3418..4791)
DNA (1374bp) protein (458aa)
dnaC2; Replicative DNA helicase (EC:3.6.4.12) rbh
Replicative DNA helicase n=1 Tax=Clostridium sp. CAG:557 RepID=R6HCJ1_9CLOT rbh
Replicative DNA helicase {ECO:0000313|EMBL:CDB23877.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
SCNpilot_BF_INOC_scaffold_1959_curated_5
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists


comp(4861..5301)
DNA (441bp) protein (147aa)
50S ribosomal protein L9 n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BDS9_9FIRM
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
50S ribosomal protein L9
SCNpilot_BF_INOC_scaffold_1959_curated_6
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5335..7326)
DNA (1992bp) protein (664aa)
DHHA1 domain protein n=2 Tax=Clostridium RepID=R6P0J3_9CLOT rbh
DHHA1 domain protein {ECO:0000313|EMBL:CDC03472.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
phosphoesterase RecJ domain-containing protein rbh
SCNpilot_BF_INOC_scaffold_1959_curated_7
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7406..8995)
DNA (1590bp) protein (530aa)
DNA polymerase III subunit gamma and tau n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E573_9FIRM rbh
DNA polymerase III subunit gamma and tau {ECO:0000313|EMBL:CDA92394.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
DNA polymerase III subunits gamma and tau rbh
SCNpilot_BF_INOC_scaffold_1959_curated_8
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9366..9446
DNA (81bp) protein (27aa)
Phosphoglycerate dehydrogenase (EC:1.1.1.95)
S-adenosyl-L-homocysteine hydrolase, NAD binding-like domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1GZK7_9CLOT
S-adenosyl-L-homocysteine hydrolase, NAD binding-like domain protein {ECO:0000313|EMBL:EJF41981.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Displaying 8 items

View Taxonomy