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SCNpilot_BF_INOC_scaffold_3648_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3648_curated_1
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..649)
DNA (648bp) protein (216aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Probable tRNA sulfurtransferase n=2 Tax=Clostridium RepID=A7VRM0_9CLOT rbh
thiazole biosynthesis/tRNA modification protein ThiI
SCNpilot_BF_INOC_scaffold_3648_curated_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(680..1813)
DNA (1134bp) protein (378aa)
iscS3; putative cysteine desulfurase (EC:2.8.1.7) rbh
Aminotransferase class V n=1 Tax=Clostridium sp. CAG:352 RepID=R6QSX9_9CLOT rbh
Aminotransferase class V {ECO:0000313|EMBL:CDC04616.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
SCNpilot_BF_INOC_scaffold_3648_curated_3
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2170..2622
DNA (453bp) protein (151aa)
C_GCAxxG_C_C family protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7I184_9CLOT
C_GCAxxG_C_C family protein
C_GCAxxG_C_C family protein {ECO:0000313|EMBL:CDZ24672.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_3648_curated_4
Haloplasma contractile, Haloplasma, Haloplasmatales, Bacteria

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comp(2724..3800)
DNA (1077bp) protein (359aa)
Transcription regulator Cro-CI family protein n=1 Tax=Haloplasma contractile SSD-17B RepID=F7PWW4_9BACT
Transcription regulator Cro-CI family protein {ECO:0000313|EMBL:ERJ12509.1}; TaxID=1033810 species="Bacteria; Haloplasmatales; Haloplasmataceae; Haloplasma.;" source="Haloplasma contractile SSD-17B.;"
HTH/TPR domain-containing protein
SCNpilot_BF_INOC_scaffold_3648_curated_5
unknown

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comp(3838..4632)
DNA (795bp) protein (265aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3648_curated_6
unknown

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comp(4647..5540)
DNA (894bp) protein (298aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3648_curated_7
Halanaerobium saccharolyticum, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(5759..6433)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5DYH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCU78036.1}; TaxID=1293054 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643.;"
PHP domain protein
SCNpilot_BF_INOC_scaffold_3648_curated_8
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6436..6699)
DNA (264bp) protein (88aa)
Cell cycle protein, FtsW/RodA/SpoVE family n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXL3_9CLOT
Cell cycle protein FtsW/RodA/SpoVE family {ECO:0000313|EMBL:CDC03754.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
cell cycle protein
SCNpilot_BF_INOC_scaffold_3648_curated_9
unknown

Not on your lists

7297..7518
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3648_curated_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7706..8131
DNA (426bp) protein (142aa)
Conserved hypothetical nucleotide-binding protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7J1_9FIRM
Conserved hypothetical nucleotide-binding protein {ECO:0000313|EMBL:CDB42459.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
conserved hypothetical nucleotide-binding protein
SCNpilot_BF_INOC_scaffold_3648_curated_11
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8128..8838
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N805_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC02416.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
peptidase M22 glycoprotease
SCNpilot_BF_INOC_scaffold_3648_curated_12
Thermoanaerobacterium saccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

8813..9268
DNA (456bp) protein (152aa)
sugar-phosphate isomerase (EC:5.3.1.6)
Sugar-phosphate isomerase, RpiB/LacA/LacB family n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VS52_THESW
Sugar-phosphate isomerase, RpiB/LacA/LacB family {ECO:0000313|EMBL:AFK85347.1}; TaxID=1094508 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485).;"
SCNpilot_BF_INOC_scaffold_3648_curated_13
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9261..9890
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
Uracil phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:557 RepID=R6GHN7_9CLOT rbh
uracil phosphoribosyltransferase rbh
SCNpilot_BF_INOC_scaffold_3648_curated_14
unknown

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10004..10966
DNA (963bp) protein (321aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3648_curated_15
Paenibacillus sp. FSL H7-0357, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11035..11247)
DNA (213bp) protein (71aa)
Transcriptional regulator n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7VR58_PAETH
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIQ19820.1}; TaxID=1536774 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0357.;"
SCNpilot_BF_INOC_scaffold_3648_curated_16
unknown

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11402..11680
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3648_curated_17
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12191..12967)
DNA (777bp) protein (259aa)
ThiF family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0X018_9CLOT rbh
ThiF family protein {ECO:0000313|EMBL:EJF41921.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
UBA/THIF-type NAD/FAD binding protein rbh
SCNpilot_BF_INOC_scaffold_3648_curated_18
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12960..13796)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Thermoanaerobacter indiensis RepID=UPI0003657ADF rbh
hypothetical protein rbh
Tax=BJP_IG2069_Syntrophobacterales_46_30
SCNpilot_BF_INOC_scaffold_3648_curated_19
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13957..14169
DNA (213bp) protein (71aa)
Copper ion binding protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FVD9_9CLOT
Copper ion binding protein {ECO:0000313|EMBL:EMS73134.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
copper ion binding protein
SCNpilot_BF_INOC_scaffold_3648_curated_20
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14362..14613
DNA (252bp) protein (84aa)
iron-only hydrogenase system regulator n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037ED481
Putative iron-only hydrogenase system regulator {ECO:0000313|EMBL:EJF42651.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3648_curated_21
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14622..16019
DNA (1398bp) protein (466aa)
Aspartate ammonia-lyase {ECO:0000313|EMBL:KGG81291.1}; EC=4.3.1.1 {ECO:0000313|EMBL:KGG81291.1};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
aspA2; aspartate ammonia-lyase (EC:4.3.1.1) rbh
Aspartate ammonia-lyase n=2 Tax=Clostridium RepID=D8GJF1_CLOLD rbh
SCNpilot_BF_INOC_scaffold_3648_curated_22
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16316..17239
DNA (924bp) protein (308aa)
HydF n=2 Tax=Clostridium kluyveri RepID=A5MZP6_CLOK5 rbh
ATP-binding protein {ECO:0000313|EMBL:KGG81292.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
hydF; HydF protein rbh
Displaying 22 items

View Taxonomy