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SCNpilot_BF_INOC_scaffold_3127_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3127_curated_1
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(3..242)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HFM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY28358.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
SCNpilot_BF_INOC_scaffold_3127_curated_2
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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257..1138
DNA (882bp) protein (294aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
methionyl-tRNA synthetase (EC:6.1.1.10) rbh
Methionine--tRNA ligase n=1 Tax=Clostridium leptum CAG:27 RepID=R6N5D5_9CLOT rbh
SCNpilot_BF_INOC_scaffold_3127_curated_3
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1131..1907
DNA (777bp) protein (259aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase TatD family n=1 Tax=Clostridium sp. CAG:413 RepID=R6NIV9_9CLOT rbh
Hydrolase TatD family {ECO:0000313|EMBL:CDC12063.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
SCNpilot_BF_INOC_scaffold_3127_curated_4
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1918..2514
DNA (597bp) protein (199aa)
radical SAM protein n=1 Tax=Clostridium arbusti RepID=UPI00028844B7
radical SAM protein
Radical SAM protein {ECO:0000313|EMBL:CDZ23297.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_3127_curated_5
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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2526..3104
DNA (579bp) protein (193aa)
Predicted hydrolases of HD superfamily (EC:3.1.3.5)
5'-nucleotidase YfbR n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZB79_9FIRM
5'-nucleotidase YfbR {ECO:0000313|EMBL:CDD27727.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
SCNpilot_BF_INOC_scaffold_3127_curated_6
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3123..3950
DNA (828bp) protein (276aa)
Aspartate/glutamate/uridylate kinase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AUE9_9CLOT rbh
aspartate/glutamate/uridylate kinase rbh
Tax=BJP_IG2157_Clostridiales_52_13
SCNpilot_BF_INOC_scaffold_3127_curated_7
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4006..4983)
DNA (978bp) protein (326aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R568_CLOSW rbh
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:EXG87507.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
hydrogenase expression/formation protein HypE rbh
SCNpilot_BF_INOC_scaffold_3127_curated_8
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4980..6035)
DNA (1056bp) protein (352aa)
Hydrogenase expression/formation protein HypD n=7 Tax=Clostridium thermocellum RepID=A3DJT1_CLOTH rbh
[NiFe] hydrogenase metallocenter assembly protein HypD {ECO:0000313|EMBL:GAE88403.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
hydrogenase expression/formation protein HypD rbh
SCNpilot_BF_INOC_scaffold_3127_curated_9
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6022..6249)
DNA (228bp) protein (76aa)
Hydrogenase assembly chaperone hypC/hupF n=7 Tax=Clostridium thermocellum RepID=A3DJT2_CLOTH
[NiFe] hydrogenase metallocenter assembly protein HypC {ECO:0000313|EMBL:GAE88404.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
hydrogenase assembly chaperone HypC/HupF
Displaying 9 items

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