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SCNpilot_BF_INOC_scaffold_1176_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1176_curated_1
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..196
DNA (195bp) protein (65aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
potassium-transporting ATPase subunit A (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Clostridium intestinale URNW RepID=U2MYM4_9CLOT
SCNpilot_BF_INOC_scaffold_1176_curated_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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204..2261
DNA (2058bp) protein (686aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Potassium-transporting ATPase B chain n=1 Tax=Clostridium sp. MSTE9 RepID=J1H7Z5_9CLOT rbh
K+-transporting ATPase subunit B rbh
SCNpilot_BF_INOC_scaffold_1176_curated_3
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2273..2833
DNA (561bp) protein (187aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
potassium-transporting ATPase subunit C (EC:3.6.3.12)
Potassium-transporting ATPase C chain n=1 Tax=Clostridium sp. MSTE9 RepID=J1H759_9CLOT
SCNpilot_BF_INOC_scaffold_1176_curated_4
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2861..3169
DNA (309bp) protein (103aa)
Sensor protein KdpD n=1 Tax=Clostridium intestinale URNW RepID=U2NH36_9CLOT
histidine kinase
Histidine kinase {ECO:0000313|EMBL:AKG36242.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
SCNpilot_BF_INOC_scaffold_1176_curated_5
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3227..5569
DNA (2343bp) protein (781aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
Sensor protein KdpD n=1 Tax=Clostridium intestinale URNW RepID=U2NH36_9CLOT rbh
histidine kinase rbh
SCNpilot_BF_INOC_scaffold_1176_curated_6
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5559..6257
DNA (699bp) protein (233aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4AE43_DESDJ rbh
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AFM02228.1}; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
SCNpilot_BF_INOC_scaffold_1176_curated_7
unknown

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7020..7205
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1176_curated_8
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7374..8096)
DNA (723bp) protein (241aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FPN8_9CLOT
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:EMS70438.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
ABC transporter
SCNpilot_BF_INOC_scaffold_1176_curated_9
unknown

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comp(8107..9483)
DNA (1377bp) protein (459aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1176_curated_10
unknown

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comp(9486..9767)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1176_curated_11
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9780..10559)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CXY9_PAESJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT00553.1}; Flags: Precursor;; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
SCNpilot_BF_INOC_scaffold_1176_curated_12
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10598..10972)
DNA (375bp) protein (125aa)
Putative transcriptional regulator n=1 Tax=Clostridium termitidis CT1112 RepID=S0FGU5_9CLOT
Putative transcriptional regulator {ECO:0000313|EMBL:EMS70462.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
GntR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1176_curated_13
unknown

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comp(11151..11996)
DNA (846bp) protein (282aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1176_curated_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12117..13475)
DNA (1359bp) protein (453aa)
UPF0210 protein HMPREF1141_2651 n=1 Tax=Clostridium sp. MSTE9 RepID=J0WUX1_9CLOT rbh
UPF0210 protein HMPREF1141_2651 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1176_curated_15
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13502..13771)
DNA (270bp) protein (90aa)
UPF0237 protein BN649_01650 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NP17_9CLOT
UPF0237 protein BN649_01650 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ACT domain-containing protein
SCNpilot_BF_INOC_scaffold_1176_curated_16
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13951..14763
DNA (813bp) protein (271aa)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Clostridium sp. CAG:678 RepID=R5KK83_9CLOT
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:CCY67250.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
HisJ family histidinol phosphate phosphatase
SCNpilot_BF_INOC_scaffold_1176_curated_17
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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14782..15261
DNA (480bp) protein (160aa)
Transcriptional regulator, AsnC family n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U440_ETHHY
transcriptional regulator, AsnC family
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ADU27720.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_1176_curated_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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15261..15701
DNA (441bp) protein (147aa)
yugH; putative aminotransferase YugH (EC:2.6.1.-)
Aminotransferase class I/II n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6XU87_9FIRM
Aminotransferase class I/II {ECO:0000313|EMBL:CDD27298.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Displaying 18 items

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