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SCNpilot_BF_INOC_scaffold_981_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_981_curated_1
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..227
DNA (225bp) protein (75aa)
Glycoside Hydrolase Family 73 protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HAG5_9FIRM
Glycoside Hydrolase Family 73 protein {ECO:0000313|EMBL:CDE36360.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Beta-N-acetylglucosaminidase
SCNpilot_BF_INOC_scaffold_981_curated_2
unknown

Not on your lists

comp(969..1361)
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_981_curated_3
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2685..4115
DNA (1431bp) protein (477aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3) rbh
Phosphoribosylformylglycinamidine synthase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYE1_9CLOT rbh
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:CDC40830.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
SCNpilot_BF_INOC_scaffold_981_curated_4
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4565..5314
DNA (750bp) protein (250aa)
Putative homoserine kinase n=1 Tax=Clostridium sp. CAG:678 RepID=R5KVP6_9CLOT rbh
Putative homoserine kinase {ECO:0000313|EMBL:CCY69179.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
homoserine kinase rbh
SCNpilot_BF_INOC_scaffold_981_curated_5
unknown

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comp(5448..8684)
DNA (3237bp) protein (1079aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_981_curated_6
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9286..9969)
DNA (684bp) protein (228aa)
Fibronectin type III domain protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T492_LEIAQ
Fibronectin type III domain protein {ECO:0000313|EMBL:ERK69527.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCNpilot_BF_INOC_scaffold_981_curated_7
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10111..10608)
DNA (498bp) protein (166aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=D3ACR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ62239.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
SCNpilot_BF_INOC_scaffold_981_curated_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11361..12038
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IY45_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDB42897.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_981_curated_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12211..13425
DNA (1215bp) protein (405aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
argG; Argininosuccinate synthase (EC:6.3.4.5) rbh
Argininosuccinate synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9I2_9CLOT rbh
SCNpilot_BF_INOC_scaffold_981_curated_10
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13430..14797
DNA (1368bp) protein (456aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
argininosuccinate lyase (EC:4.3.2.1) rbh
Argininosuccinate lyase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QXI3_9CLOT rbh
SCNpilot_BF_INOC_scaffold_981_curated_11
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14810..15847
DNA (1038bp) protein (346aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38) rbh
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Clostridium sp. CAG:964 RepID=R6U6A6_9CLOT rbh
SCNpilot_BF_INOC_scaffold_981_curated_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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15848..17086
DNA (1239bp) protein (413aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1) rbh
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YHI4_9FIRM rbh
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
SCNpilot_BF_INOC_scaffold_981_curated_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17109..17963
DNA (855bp) protein (285aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
acetylglutamate kinase (EC:2.7.2.8) rbh
Acetylglutamate kinase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H8N6_9CLOT rbh
SCNpilot_BF_INOC_scaffold_981_curated_14
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17960..19168
DNA (1209bp) protein (403aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
argD; Acetylornithine aminotransferase (EC:2.6.1.11) rbh
Acetylornithine aminotransferase n=1 Tax=Clostridium sp. CAG:352 RepID=R6RTB3_9CLOT rbh
SCNpilot_BF_INOC_scaffold_981_curated_15
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19165..20079
DNA (915bp) protein (305aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ornithine carbamoyltransferase (EC:2.1.3.3) rbh
Ornithine carbamoyltransferase n=2 Tax=Clostridium RepID=A7VYH4_9CLOT rbh
SCNpilot_BF_INOC_scaffold_981_curated_16
Staphylococcus simulans, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20096..21139
DNA (1044bp) protein (348aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=1405498 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus simulans UMC-CNS-990.;"
Mannonate dehydratase n=1 Tax=Staphylococcus simulans UMC-CNS-990 PF92_STASI">RepID=U7PF92_STASI rbh
mannonate dehydratase rbh
SCNpilot_BF_INOC_scaffold_981_curated_17
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21166..22041)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8V5_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU27190.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_981_curated_18
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists

comp(22072..22521)
DNA (450bp) protein (150aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
Mini-ribonuclease 3 n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BE59_9FIRM
cysteine-tRNA ligase
SCNpilot_BF_INOC_scaffold_981_curated_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22493..23620)
DNA (1128bp) protein (376aa)
GTPase Obg n=1 Tax=Clostridium sp. MSTE9 RepID=J0N643_9CLOT rbh
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
obg; GTPase obg rbh
SCNpilot_BF_INOC_scaffold_981_curated_20
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23869..24153)
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7Q4_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
LSU ribosomal protein L27P
SCNpilot_BF_INOC_scaffold_981_curated_21
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24146..24472)
DNA (327bp) protein (109aa)
Predicted ribosomal protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y4L1_9FIRM
Predicted ribosomal protein {ECO:0000313|EMBL:CDA19769.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
SCNpilot_BF_INOC_scaffold_981_curated_22
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24475..24846)
DNA (372bp) protein (124aa)
50S ribosomal protein L21 n=1 Tax=Ruminococcus albus 8 RepID=E9SI39_RUMAL
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
50S ribosomal protein L21
SCNpilot_BF_INOC_scaffold_981_curated_23
GWE2_Clostridiales_32_10_curated, Clostridiales, Bacteria

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comp(24967..25881)
DNA (915bp) protein (305aa)
integral membrane protein TerC id=1888673 bin=GWE2_Clostridiales_32_10 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
integral membrane protein, TerC family
Tax=GWE2_Clostridiales_32_10_curated
SCNpilot_BF_INOC_scaffold_981_curated_24
unknown

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comp(25929..26057)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_981_curated_25
unknown

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26180..26359
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_981_curated_26
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26418..27761
DNA (1344bp) protein (448aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2B8S7_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB56535.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
invasion protein rbh
SCNpilot_BF_INOC_scaffold_981_curated_27
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27792..28904)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N178_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49531.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Displaying 27 items

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