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SCNpilot_BF_INOC_scaffold_2073_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2073_curated_1
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..527)
DNA (525bp) protein (175aa)
Rubrerythrin n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2F5_9CLOT
Rubrerythrin {ECO:0000313|EMBL:CCX49448.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rubrerythrin
SCNpilot_BF_INOC_scaffold_2073_curated_2
GWC2_Spirochaetes_52_13_curated, Spirochaetes, Bacteria

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comp(555..938)
DNA (384bp) protein (128aa)
dfx; desulfoferrodoxin Dfx (EC:1.15.1.2)
Desulfoferrodoxin id=4352583 bin=GWC2_Spirochaete_52_13 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
Tax=GWC2_Spirochaetes_52_13_curated
SCNpilot_BF_INOC_scaffold_2073_curated_3
Azospirillum sp. CAG:239, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(956..1336)
DNA (381bp) protein (127aa)
Transcriptional regulator Fur family n=1 Tax=Azospirillum sp. CAG:239 RepID=R6J487_9PROT
Transcriptional regulator Fur family {ECO:0000313|EMBL:CDB53519.1}; TaxID=1262705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; environmental samples.;" source="Azospirillum sp. CAG:239.;"
oxidative stress regulatory protein
SCNpilot_BF_INOC_scaffold_2073_curated_4
Mycoplasma sp. CAG:776, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

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1512..3686
DNA (2175bp) protein (725aa)
SH3 type 3 domain protein n=1 Tax=Mycoplasma sp. CAG:776 RepID=R7NJU3_9MOLU
SH3 type 3 domain protein {ECO:0000313|EMBL:CDF12363.1}; TaxID=1262906 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; environmental samples.;" source="Mycoplasma sp. CAG:776.;"
mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
SCNpilot_BF_INOC_scaffold_2073_curated_5
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3909..4601
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I6W1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETA80737.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2073_curated_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4672..5436
DNA (765bp) protein (255aa)
Zinc transporter n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UXI3_CLOBA
zinc transporter ZupT
Zinc transporter {ECO:0000313|EMBL:EES48689.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
SCNpilot_BF_INOC_scaffold_2073_curated_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5521..5898
DNA (378bp) protein (126aa)
Transcriptional regulator n=1 Tax=Clostridium sp. MSTE9 RepID=J0WPZ4_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:EJF38521.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
GntR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_2073_curated_8
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5891..6790
DNA (900bp) protein (300aa)
ABC transporter n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003721031 rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EJF38536.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_2073_curated_9
unknown

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7875..8906
DNA (1032bp) protein (344aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2073_curated_10
GWD2_Clostridiales_32_59_curated, Clostridiales, Bacteria

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8942..9151
DNA (210bp) protein (70aa)
Ferredoxin id=1854486 bin=GWD2_Clostridiales_32_59 species=Clostridium ljungdahlii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65
ferredoxin
Tax=GWD2_Clostridiales_32_59_curated
SCNpilot_BF_INOC_scaffold_2073_curated_11
Haloplasma contractile, Haloplasma, Haloplasmatales, Bacteria

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comp(9504..10652)
DNA (1149bp) protein (383aa)
spore germination protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E2A3 rbh
Spore germination protein {ECO:0000313|EMBL:ERJ13290.1}; TaxID=1033810 species="Bacteria; Haloplasmatales; Haloplasmataceae; Haloplasma.;" source="Haloplasma contractile SSD-17B.;"
spore germination protein rbh
SCNpilot_BF_INOC_scaffold_2073_curated_12
unknown

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comp(10671..10895)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2073_curated_13
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10900..11619)
DNA (720bp) protein (240aa)
Germination protein, Ger(X)C family n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LW91_CLOCD
germination protein, Ger(X)C family
Germination protein, Ger(X)C family {ECO:0000313|EMBL:AEV69738.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
SCNpilot_BF_INOC_scaffold_2073_curated_14
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12038..13528)
DNA (1491bp) protein (497aa)
Spore germination protein KA n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R209_9CLOT rbh
spore germination protein, GerA family rbh
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_2073_curated_15
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13788..15662)
DNA (1875bp) protein (625aa)
Glycosidases (EC:3.2.1.41) rbh
Alpha amylase catalytic domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A9M1_9CLOT rbh
Alpha amylase catalytic domain protein {ECO:0000313|EMBL:CCX38564.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
SCNpilot_BF_INOC_scaffold_2073_curated_16
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15693..18098)
DNA (2406bp) protein (802aa)
Phosphorylase glycogen/starch/alpha-glucan family n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y6M1_9FIRM rbh
Phosphorylase glycogen/starch/alpha-glucan family {ECO:0000313|EMBL:CDA20484.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
glycogen/starch/alpha-glucan phosphorylase rbh
SCNpilot_BF_INOC_scaffold_2073_curated_17
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18808..19179
DNA (372bp) protein (124aa)
G5 domain protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U722_ETHHY
G5 domain protein {ECO:0000313|EMBL:ADU28092.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
Displaying 17 items

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