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SCNpilot_BF_INOC_scaffold_4966_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_4966_curated_1
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..499)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KQ52_CLOPH
Uncharacterized protein {ECO:0000313|EMBL:KEZ88147.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_4966_curated_2
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(591..1301)
DNA (711bp) protein (237aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FYH2_9CLOT rbh
ABC transporter {ECO:0000313|EMBL:KEZ88146.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
ABC transporter rbh
SCNpilot_BF_INOC_scaffold_4966_curated_3
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1294..2043)
DNA (750bp) protein (250aa)
PHP domain protein {ECO:0000313|EMBL:EEG31183.1}; EC=3.1.3.- {ECO:0000313|EMBL:EEG31183.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
PHP domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBA7_9CLOT
PHP domain-containing protein
SCNpilot_BF_INOC_scaffold_4966_curated_4
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2018..2761)
DNA (744bp) protein (248aa)
Capsular exopolysaccharide family n=1 Tax=Clostridium sp. CAG:217 RepID=R6J119_9CLOT
Capsular exopolysaccharide family {ECO:0000313|EMBL:CDB51386.1}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
capsular exopolysaccharide family protein
SCNpilot_BF_INOC_scaffold_4966_curated_5
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(2790..3461)
DNA (672bp) protein (224aa)
Chain length determinant protein n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BG73_9FIRM
Chain length determinant protein {ECO:0000313|EMBL:CDD64138.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
lipopolysaccharide biosynthesis protein
SCNpilot_BF_INOC_scaffold_4966_curated_6
Bacillus sp. TS-2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3605..4348)
DNA (744bp) protein (248aa)
oxidoreductase n=1 Tax=Paenibacillus sp. JC66 RepID=UPI00028A359F rbh
Putative dehydrogenase {ECO:0000313|EMBL:GAF63411.1}; TaxID=1450694 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. TS-2.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_4966_curated_7
Bacillus sp. TS-2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4712..5560)
DNA (849bp) protein (283aa)
Sugar phosphate isomerase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VPI6_CLOSH
Putative isomerase {ECO:0000313|EMBL:GAF63412.1}; TaxID=1450694 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. TS-2.;"
xylose isomerase domain-containing protein TIM barrel
SCNpilot_BF_INOC_scaffold_4966_curated_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5553..6317)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Saccharibacillus kuerlensis RepID=UPI0003808EA5
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:CDC09311.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
xylose isomerase
SCNpilot_BF_INOC_scaffold_4966_curated_9
Thermoanaerobacterium saccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(6330..7703)
DNA (1374bp) protein (458aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1094508 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485).;"
Uronate isomerase n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VRR1_THESW rbh
uronate isomerase rbh
SCNpilot_BF_INOC_scaffold_4966_curated_10
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7761..8087)
DNA (327bp) protein (109aa)
KHG/KDPG aldolase KdgA {ECO:0000313|EMBL:AGC67820.1}; EC=4.1.2.14 {ECO:0000313|EMBL:AGC67820.1};; EC=4.1.3.16 {ECO:0000313|EMBL:AGC67820.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Eda n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VID9_CLOSH
SCNpilot_BF_INOC_scaffold_4966_curated_11
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8402..9244)
DNA (843bp) protein (281aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=E9RSM0_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD60277.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_BF_INOC_scaffold_4966_curated_12
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9511..10401
DNA (891bp) protein (297aa)
AraC-type DNA-binding domain-containing protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FMY6_9CLOT
AraC-type DNA-binding domain-containing protein {ECO:0000313|EMBL:EMS73600.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
helix-turn-helix domain-containing protein
SCNpilot_BF_INOC_scaffold_4966_curated_13
Thermoplasmatales archaeon BRNA1, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

10463..11125
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YU45_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI47356.1}; TaxID=1054217 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon BRNA1.;"
SCNpilot_BF_INOC_scaffold_4966_curated_14
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11159..11365
DNA (207bp) protein (69aa)
4Fe-4S binding domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X8L7_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDD02712.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
2-oxoacid:acceptor oxidoreductase subunit delta
SCNpilot_BF_INOC_scaffold_4966_curated_15
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11390..12283
DNA (894bp) protein (298aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase thiamine diP-binding domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I718_9FIRM rbh
Pyruvate flavodoxin/ferredoxin oxidoreductase thiamine diP-binding domain protein {ECO:0000313|EMBL:CDB41206.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein rbh
Displaying 15 items

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