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SCNpilot_BF_INOC_scaffold_1792_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1792_curated_1
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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275..541
DNA (267bp) protein (89aa)
mannose-6-phosphate isomerase, type 1 (EC:5.3.1.8)
Mannose-6-phosphate isomerase class I n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLL3_9FIRM
Mannose-6-phosphate isomerase class I {ECO:0000313|EMBL:CDF00843.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
SCNpilot_BF_INOC_scaffold_1792_curated_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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554..1045
DNA (492bp) protein (164aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NWM8_9CLOT
SCNpilot_BF_INOC_scaffold_1792_curated_3
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1865..2371
DNA (507bp) protein (169aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
pgk; Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=2 Tax=Clostridium RepID=A7VRE4_9CLOT
SCNpilot_BF_INOC_scaffold_1792_curated_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2429..3196
DNA (768bp) protein (256aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
tpiA; Triosephosphate isomerase (EC:5.3.1.1) rbh
Triosephosphate isomerase n=2 Tax=Clostridium RepID=A7VRE5_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1792_curated_5
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3378..4913
DNA (1536bp) protein (512aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=2 Tax=root RepID=R5MN69_9FIRM rbh
gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase rbh
SCNpilot_BF_INOC_scaffold_1792_curated_6
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5285..6034
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PS18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EET87943.1}; Flags: Precursor;; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1792_curated_7
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6154..6645
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R3K6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC39759.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1792_curated_8
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6709..7233
DNA (525bp) protein (175aa)
Putative CDP-alcohol phosphatidyltransferase n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LKV2_ACEWD
putative CDP-alcohol phosphatidyltransferase
Putative CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:AFA50061.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
SCNpilot_BF_INOC_scaffold_1792_curated_9
unknown

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comp(7223..7687)
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1792_curated_10
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7802..8734)
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Cysteine synthase A n=1 Tax=Clostridium termitidis CT1112 RepID=S0FF65_9CLOT rbh
cysteine synthase A rbh
SCNpilot_BF_INOC_scaffold_1792_curated_11
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9007..9453
DNA (447bp) protein (149aa)
Rrf2 family protein (Putative transcriptional regulator) n=1 Tax=Clostridium termitidis CT1112 RepID=S0FR56_9CLOT
Rrf2 family protein (Putative transcriptional regulator) {ECO:0000313|EMBL:EMS70953.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
AsnC family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1792_curated_12
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9550..10035
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KJ74_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX42486.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
SCNpilot_BF_INOC_scaffold_1792_curated_13
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11931..12146
DNA (216bp) protein (72aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Tryptophan synthase beta subunit TrpB2 n=1 Tax=Bacteroides sp. CAG:709 RepID=R6E200_9BACE
pyridoxal-phosphate dependent TrpB-like enzyme
Displaying 13 items

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