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SCNpilot_BF_INOC_scaffold_3273_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3273_curated_1
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..457
DNA (456bp) protein (152aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 12016).;"
TrpB2 n=2 Tax=Clostridium kluyveri RepID=A5N1S4_CLOK5
tryptophan synthase subunit beta
SCNpilot_BF_INOC_scaffold_3273_curated_2
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(583..1542)
DNA (960bp) protein (320aa)
ldh; L-lactate dehydrogenase (EC:1.1.1.27) rbh
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L-lactate dehydrogenase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LP00_9FIRM rbh
SCNpilot_BF_INOC_scaffold_3273_curated_3
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1559..2344)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0NEP3_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB88590.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
Cro/CI family transcriptional regulator
SCNpilot_BF_INOC_scaffold_3273_curated_4
unknown

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2625..2867
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3273_curated_5
Paenibacillus sp. FSL H7-0737, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2836..3150)
DNA (315bp) protein (105aa)
Alpha-L-fucosidase n=2 Tax=Paenibacillus RepID=F5LIN7_9BACL
alpha-L-fucosidase
Alpha-L-fucosidase {ECO:0000313|EMBL:AIQ24988.1}; TaxID=1536775 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0737.;"
SCNpilot_BF_INOC_scaffold_3273_curated_6
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3447..4019)
DNA (573bp) protein (191aa)
alpha-L-fucosidase (EC:3.2.1.51)
alpha-L-fucosidase n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI0002F844E2 rbh
Alpha-L-fucosidase {ECO:0000313|EMBL:EHQ62361.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
SCNpilot_BF_INOC_scaffold_3273_curated_7
Paenibacillus sp. FSL R7-0273, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4156..4980
DNA (825bp) protein (275aa)
Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D7E7_PAESJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ45839.1}; TaxID=1536772 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-0273.;"
SCNpilot_BF_INOC_scaffold_3273_curated_8
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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5149..7005
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI0003737276 rbh
hypothetical protein rbh
Tax=RBG_13_Planctomycetes_62_9_curated
SCNpilot_BF_INOC_scaffold_3273_curated_9
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7096..8196
DNA (1101bp) protein (367aa)
Sugar kinase, ribokinase family {ECO:0000313|EMBL:EMS69011.1}; EC=2.7.1.45 {ECO:0000313|EMBL:EMS69011.1};; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
gck1; Gck (EC:2.7.1.45) rbh
Sugar kinase, ribokinase family n=1 Tax=Clostridium termitidis CT1112 RepID=S0FGV7_9CLOT rbh
SCNpilot_BF_INOC_scaffold_3273_curated_10
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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8226..9053
DNA (828bp) protein (276aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC:5.3.1.17) rbh
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LRD4_TEPAE rbh
SCNpilot_BF_INOC_scaffold_3273_curated_11
Vibrio furnissii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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9473..9799
DNA (327bp) protein (109aa)
2-deoxy-D-gluconate 3-dehydrogenase n=2 Tax=Vibrio furnissii RepID=F0LZT1_VIBFN
2-deoxy-D-gluconate 3-dehydrogenase
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:ADT89430.1}; TaxID=903510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio furnissii (strain DSM 14383 / NCTC 11218).;"
SCNpilot_BF_INOC_scaffold_3273_curated_12
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10096..15315
DNA (5220bp) protein (1740aa)
Ricin-type beta-trefoil lectin domain protein (Fragment) n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EEE2_9CLOT
Ricin-type beta-trefoil lectin domain protein {ECO:0000313|EMBL:EEG30158.1}; Flags: Fragment;; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative cell wall associated protein
Displaying 12 items

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