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SCNpilot_BF_INOC_scaffold_1551_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1551_curated_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(74..880)
DNA (807bp) protein (269aa)
ParB-like protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA27_9CLOT
ParB-like protein {ECO:0000313|EMBL:EEG31646.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
noc; nucleoid occlusion protein Noc
SCNpilot_BF_INOC_scaffold_1551_curated_2
Dictyoglomus turgidum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

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1166..2083
DNA (918bp) protein (306aa)
Glycoside hydrolase family 5 n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZM2_DICTD
glycoside hydrolase family protein
Glycoside hydrolase family 5 {ECO:0000313|EMBL:ACK41955.1}; TaxID=515635 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus turgidum (strain Z-1310 / DSM 6724).;"
SCNpilot_BF_INOC_scaffold_1551_curated_3
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(2122..3987)
DNA (1866bp) protein (622aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZDG5_9FIRM rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
glucose-inhibited division protein A rbh
SCNpilot_BF_INOC_scaffold_1551_curated_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3997..5355)
DNA (1359bp) protein (453aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRT5_9CLOT rbh
tRNA modification GTPase TrmE rbh
SCNpilot_BF_INOC_scaffold_1551_curated_5
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5521..6393)
DNA (873bp) protein (291aa)
R3H domain protein n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DRF1_9FIRM
R3H domain protein {ECO:0000313|EMBL:CDA90190.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
single-stranded nucleic acid binding R3H domain-containing protein
SCNpilot_BF_INOC_scaffold_1551_curated_6
Listeria innocua, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6437..7198)
DNA (762bp) protein (254aa)
Membrane protein insertase YidC n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YU83_LISIO
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01811}; Flags: Precursor;; TaxID=1002366 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria innocua ATCC 33091.;"
membrane protein OxaA 1
SCNpilot_BF_INOC_scaffold_1551_curated_7
Listeria floridensis, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7294..7518)
DNA (225bp) protein (75aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA21_9CLOT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1265817 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria floridensis FSL S10-1187.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1551_curated_8
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7535..7873)
DNA (339bp) protein (113aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
ribonuclease P n=1 Tax=Clostridium sporosphaeroides RepID=UPI000377C6B6
ribonuclease P protein component
SCNpilot_BF_INOC_scaffold_1551_curated_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7893..8027)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=2 Tax=Firmicutes RepID=R6IES6_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
LSU ribosomal protein L34P
SCNpilot_BF_INOC_scaffold_1551_curated_10
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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8336..9637
DNA (1302bp) protein (434aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U5C5_ETHHY rbh
chromosomal replication initiator protein DnaA rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
SCNpilot_BF_INOC_scaffold_1551_curated_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9940..11046
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA polymerase III subunit beta (EC:2.7.7.7) rbh
DNA polymerase III subunit beta n=1 Tax=Clostridium sp. MSTE9 RepID=J1H255_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1551_curated_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11036..11245
DNA (210bp) protein (70aa)
Uncharacterized conserved protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZF8_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK99407.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
SCNpilot_BF_INOC_scaffold_1551_curated_13
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11246..12232
DNA (987bp) protein (329aa)
DNA replication and repair protein RecF n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRS2_9CLOT rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
DNA replication and repair protein RecF rbh
Displaying 13 items

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