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SCNpilot_BF_INOC_scaffold_2502_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2502_curated_1
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..515
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Anaerotruncus sp. G3(2012) RepID=R9LTR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS59117.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
clpB; Chaperone protein clpB
SCNpilot_BF_INOC_scaffold_2502_curated_trna_1
unknown

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567..637
DNA (71bp)
transferRNA Gly
SCNpilot_BF_INOC_scaffold_2502_curated_trna_2
unknown

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645..718
DNA (74bp)
transferRNA Arg
SCNpilot_BF_INOC_scaffold_2502_curated_trna_3
unknown

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784..857
DNA (74bp)
transferRNA His
SCNpilot_BF_INOC_scaffold_2502_curated_trna_4
unknown

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864..935
DNA (72bp)
transferRNA Gln
SCNpilot_BF_INOC_scaffold_2502_curated_2
unknown

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1138..1695
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2502_curated_3
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1740..2438
DNA (699bp) protein (233aa)
N-acetylmuramoyl-L-alanine amidase CwlD n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9L911_9FIRM
cell wall hydrolase/autolysin
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:CDZ24186.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2502_curated_4
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2444..3796
DNA (1353bp) protein (451aa)
DNA repair protein radA n=2 Tax=Clostridium RepID=R6NDE2_9CLOT rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
DNA repair protein RadA rbh
SCNpilot_BF_INOC_scaffold_2502_curated_5
unknown

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comp(3731..3967)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2502_curated_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4208..5182
DNA (975bp) protein (325aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHL9_9CLOT
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEG29037.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2502_curated_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5182..6366
DNA (1185bp) protein (395aa)
Efflux ABC transporter, permease protein n=2 Tax=Clostridium RepID=A7VWZ0_9CLOT rbh
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDC04218.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_2502_curated_8
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6377..7108
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHL7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24181.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2502_curated_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7947..8231
DNA (285bp) protein (95aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42)
branched-chain amino acid aminotransferase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000364C7E5
SCNpilot_BF_INOC_scaffold_2502_curated_10
unknown

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8277..8348
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 14 items

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