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SCNpilot_BF_INOC_scaffold_1852_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1852_curated_1
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..255)
DNA (255bp) protein (85aa)
membrane dipeptidase (EC:3.4.13.19)
Membrane dipeptidase {ECO:0000313|EMBL:CDZ24030.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CDZ24030.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Renal dipeptidase family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YIB6_9FIRM
SCNpilot_BF_INOC_scaffold_1852_curated_2
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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899..1870
DNA (972bp) protein (324aa)
threonine synthase (EC:4.2.3.1) rbh
Threonine synthase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UKI7_RUMA7 rbh
Threonine synthase {ECO:0000313|EMBL:EXM40363.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
SCNpilot_BF_INOC_scaffold_1852_curated_3
unknown

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comp(1917..2096)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1852_curated_4
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2225..2908
DNA (684bp) protein (228aa)
Ser/Thr phosphatase family protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5U0_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDB41854.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
metallophosphoesterase
SCNpilot_BF_INOC_scaffold_1852_curated_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3010..4314
DNA (1305bp) protein (435aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Trigger factor n=1 Tax=Clostridium sp. MSTE9 RepID=J0WUY8_9CLOT rbh
trigger factor rbh
SCNpilot_BF_INOC_scaffold_1852_curated_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4376..4957
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92) rbh
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Clostridium sp. MSTE9 RepID=J1H4M2_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1852_curated_7
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5049..6359
DNA (1311bp) protein (437aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridium sp. CAG:557 RepID=R6HBS9_9CLOT rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX rbh
SCNpilot_BF_INOC_scaffold_1852_curated_8
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6432..8837
DNA (2406bp) protein (802aa)
lon; Lon protease (EC:3.4.21.53) rbh
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Lon protease n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HUB1_9FIRM rbh
SCNpilot_BF_INOC_scaffold_1852_curated_9
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8909..9520
DNA (612bp) protein (204aa)
Probable GTP-binding protein EngB n=2 Tax=environmental samples RepID=R5YD98_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
SCNpilot_BF_INOC_scaffold_1852_curated_10
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9507..10805
DNA (1299bp) protein (433aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Diaminopimelate decarboxylase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L1J7_9FIRM rbh
diaminopimelate decarboxylase rbh
SCNpilot_BF_INOC_scaffold_1852_curated_11
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11334..11921
DNA (588bp) protein (196aa)
Methyltransferase domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N5X6_9CLOT
type 11 methyltransferase
Type 11 methyltransferase {ECO:0000313|EMBL:CDZ24111.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1852_curated_trna_1
unknown

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12034..12106
DNA (73bp)
transferRNA Val
SCNpilot_BF_INOC_scaffold_1852_curated_trna_2
unknown

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12116..12189
DNA (74bp)
transferRNA Asp
SCNpilot_BF_INOC_scaffold_1852_curated_trna_3
unknown

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12225..12297
DNA (73bp)
transferRNA Phe
SCNpilot_BF_INOC_scaffold_1852_curated_trna_4
unknown

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12305..12377
DNA (73bp)
transferRNA Gly
SCNpilot_BF_INOC_scaffold_1852_curated_trna_5
unknown

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12431..12502
DNA (72bp)
transferRNA Cys
SCNpilot_BF_INOC_scaffold_1852_curated_12
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12707..13729)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EYC9_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDE06472.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
glycosyl hydrolase
SCNpilot_BF_INOC_scaffold_1852_curated_13
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13906..14556)
DNA (651bp) protein (217aa)
2-dehydropantoate 2-reductase n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EVM3_9FIRM
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:CDE06486.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
GntR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1852_curated_14
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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15694..16020
DNA (327bp) protein (109aa)
Putative membrane protein id=2752819 bin=GWF2_Clostridiales_36_10 species=Clostridium botulinum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Clostridiales_36_10_curated
SCNpilot_BF_INOC_scaffold_1852_curated_15
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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16962..17732
DNA (771bp) protein (257aa)
ABC transporter n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7ENW6_CLOPA rbh
ABC-type polysaccharide/polyol phosphate export system, permease component rbh
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_1852_curated_16
unknown

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18507..18632
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 21 items

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