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SCNpilot_BF_INOC_scaffold_1648_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1648_curated_1
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3..2240
DNA (2238bp) protein (746aa)
Chromosome condensation regulator RCC1 (Fragment) n=1 Tax=Bacillus azotoformans LMG 9581 RepID=K6E0Z9_BACAZ
Uncharacterized protein {ECO:0000313|EMBL:EHQ61279.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1648_curated_2
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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2771..3658
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HI62_9CLOT
phosphate ABC transporter periplasmic component-like protein
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_1648_curated_3
unknown

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3660..4211
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_curated_4
unknown

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4268..4972
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_curated_5
unknown

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5030..6349
DNA (1320bp) protein (440aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_curated_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6477..7232)
DNA (756bp) protein (252aa)
Transcriptional regulator, DeoR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8C3_9CLOT
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEG32288.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
DeoR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1648_curated_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7382..8647
DNA (1266bp) protein (422aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L-rhamnose isomerase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8C2_9CLOT rbh
L-rhamnose isomerase rbh
SCNpilot_BF_INOC_scaffold_1648_curated_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8631..9320
DNA (690bp) protein (230aa)
fucA; L-fuculose phosphate aldolase (EC:4.1.2.17)
L-fuculose phosphate aldolase n=6 Tax=Clostridium perfringens RepID=Q0TS93_CLOP1
Fuculose phosphate aldolase {ECO:0000313|EMBL:KJU71128.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
SCNpilot_BF_INOC_scaffold_1648_curated_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9335..10810
DNA (1476bp) protein (492aa)
Sugar (pentulose and hexulose) kinases (EC:2.7.1.5 2.7.1.51) rbh
Sugar (Pentulose and hexulose) kinases n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5F5_9FIRM rbh
Sugar (Pentulose and hexulose) kinases {ECO:0000313|EMBL:CDB41724.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
SCNpilot_BF_INOC_scaffold_1648_curated_10
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10953..12152)
DNA (1200bp) protein (400aa)
Major facilitator superfamily MFS_1 n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DEQ5_CLOTH
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABN52434.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_BF_INOC_scaffold_1648_curated_11
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12340..13110
DNA (771bp) protein (257aa)
RNA polymerase sigma factor n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LTH7_9FIRM rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
sigma-B/F/G subfamily RNA polymerase sigma-28 factor rbh
SCNpilot_BF_INOC_scaffold_1648_curated_12

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13274..13975
DNA (702bp) protein (234aa)
Putative phosphatase n=1 Tax=Clostridium sp. CAG:964 RepID=R6UBR3_9CLOT
Marine sediment metagenome DNA, contig: S01H4_L06570 {ECO:0000313|EMBL:GAG79523.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
phosphatase
SCNpilot_BF_INOC_scaffold_1648_curated_13
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14070..15275
DNA (1206bp) protein (402aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
ackA; Acetate kinase (EC:2.7.2.1) rbh
Acetate kinase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6S0_9FIRM rbh
SCNpilot_BF_INOC_scaffold_1648_curated_14
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15439..16710
DNA (1272bp) protein (424aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WJB2_9FIRM
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDD04216.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
sigma-70 family RNA polymerase sigma factor
SCNpilot_BF_INOC_scaffold_1648_curated_15
unknown

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16710..17063
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_curated_16
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17220..17795
DNA (576bp) protein (192aa)
Helix-turn-helix domain protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SGC1_9CLOT
Helix-turn-helix domain protein {ECO:0000313|EMBL:CDC60198.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
helix-turn-helix domain-containing protein
SCNpilot_BF_INOC_scaffold_1648_curated_17
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17997..18884
DNA (888bp) protein (296aa)
DegV family protein n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SVK7_SYNGF rbh
degV family protein rbh
DegV family protein {ECO:0000313|EMBL:ADY54483.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
SCNpilot_BF_INOC_scaffold_1648_curated_18
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19288..22899
DNA (3612bp) protein (1204aa)
wapA1; tRNA(Glu)-specific nuclease WapA (EC:3.1.-.-)
Putative cell wall associated protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EHN0_CLOPA
Pretoxin HINT domain protein {ECO:0000313|EMBL:CDE90341.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
Displaying 18 items

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