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SCNpilot_BF_INOC_scaffold_3203_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3203_curated_1
unknown

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comp(3..104)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3203_curated_2
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(101..682)
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KN21_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41520.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
SCNpilot_BF_INOC_scaffold_3203_curated_3
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(792..1055)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KMA9_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX42863.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
SCNpilot_BF_INOC_scaffold_3203_curated_4
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1171..1647)
DNA (477bp) protein (159aa)
Sortase SrtB family n=1 Tax=Clostridium sp. CAG:352 RepID=R6QQW9_9CLOT
Sortase SrtB family {ECO:0000313|EMBL:CDC38978.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3203_curated_5
unknown

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1860..2057
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3203_curated_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2155..2556)
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6S0_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23622.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_3203_curated_7
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2581..3138)
DNA (558bp) protein (186aa)
Elongation factor P n=2 Tax=root RepID=R5MPT6_9FIRM rbh
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
translation elongation factor P (EF-P) rbh
SCNpilot_BF_INOC_scaffold_3203_curated_8
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3400..3831)
DNA (432bp) protein (144aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
3-dehydroquinate dehydratase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BDV0_9CLOT
3-dehydroquinate dehydratase
SCNpilot_BF_INOC_scaffold_3203_curated_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3851..4345)
DNA (495bp) protein (165aa)
HAD phosphatase, family IIIA {ECO:0000313|EMBL:EEG29072.1}; EC=3.1.3.- {ECO:0000313|EMBL:EEG29072.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
HAD phosphatase, family IIIA n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHE8_9CLOT
HAD superfamily phosphatase
SCNpilot_BF_INOC_scaffold_3203_curated_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4408..4584)
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=1 Tax=Clostridium sp. CAG:413 RepID=R6PLJ9_9CLOT
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
rpsU; 30S ribosomal protein S21
SCNpilot_BF_INOC_scaffold_3203_curated_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4661..7069)
DNA (2409bp) protein (803aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
leuS; Leucine-tRNA ligase (EC:6.1.1.4) rbh
Leucine--tRNA ligase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQA8_9FIRM rbh
SCNpilot_BF_INOC_scaffold_3203_curated_12
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(7146..7493)
DNA (348bp) protein (116aa)
Ribosomal silencing factor RsfS n=2 Tax=root RepID=R7BER6_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
iojap-related protein
SCNpilot_BF_INOC_scaffold_3203_curated_13
unknown

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comp(7521..7931)
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3203_curated_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8646..9656)
DNA (1011bp) protein (337aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHF4_9CLOT
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EEG29078.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative secreted protein
Displaying 14 items

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