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SCNpilot_BF_INOC_scaffold_2050_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2050_curated_1
Clostridium sp. CAG:567, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55..420)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:567 RepID=R7MAM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE96988.1}; TaxID=1262820 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:567.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2050_curated_2
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(470..1258)
DNA (789bp) protein (263aa)
galT; galactose-1-phosphate uridylyltransferase GalT (EC:2.7.7.12) rbh
Galactose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU000506}; EC=2.7.7.12 {ECO:0000256|RuleBase:RU000506};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Galactose-1-phosphate uridylyltransferase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VR33_CLOSH rbh
SCNpilot_BF_INOC_scaffold_2050_curated_3
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1312..2712)
DNA (1401bp) protein (467aa)
galK; Galactokinase (EC:2.7.1.6) rbh
GHMP kinase, N-terminal domain protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P930_9FIRM rbh
GHMP kinase, N-terminal domain protein {ECO:0000313|EMBL:EDS12056.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
SCNpilot_BF_INOC_scaffold_2050_curated_4
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists

2971..3900
DNA (930bp) protein (310aa)
Diacylglycerol kinase catalytic region id=2086181 bin=GWE2_Spirochaete_31_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good + rbh
diacylglycerol kinase catalytic region
Tax=GWE2_Spirochaetes_31_10_curated
SCNpilot_BF_INOC_scaffold_2050_curated_5
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists

3920..4678
DNA (759bp) protein (253aa)
Phosphoesterase PA-phosphatase related protein id=2086179 bin=GWE2_Spirochaete_31_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good +
phosphoesterase PA-phosphatase-like protein
Tax=GWE2_Spirochaetes_31_10_curated
SCNpilot_BF_INOC_scaffold_2050_curated_6
unknown

Not on your lists

comp(4669..5016)
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2050_curated_7
Mucispirillum schaedleri, Mucispirillum, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

5202..5579
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Mucispirillum schaedleri ASF457 RepID=V2QGE2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ESJ98279.1}; TaxID=1379858 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Mucispirillum.;" source="Mucispirillum schaedleri ASF457.;"
endoribonuclease L-PSP
SCNpilot_BF_INOC_scaffold_2050_curated_8
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5615..6505)
DNA (891bp) protein (297aa)
yhdF; putative oxidoreductase YhdF (EC:1.-.-.-) rbh
Putative oxidoreductase YhdF {ECO:0000313|EMBL:CDZ24673.1}; EC=1.-.-.- {ECO:0000313|EMBL:CDZ24673.1};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8EC02_9BACL rbh
SCNpilot_BF_INOC_scaffold_2050_curated_9
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6633..7466
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Cohnella laeviribosi RepID=UPI0003765257
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:AFC29211.1}; TaxID=1116391 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus 3016.;"
SCNpilot_BF_INOC_scaffold_2050_curated_10
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7575..8279
DNA (705bp) protein (235aa)
Putative PHP domain-containing protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T3K6_ROSHA
putative PHP domain-containing protein
Putative PHP domain-containing protein {ECO:0000313|EMBL:AEN96820.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
SCNpilot_BF_INOC_scaffold_2050_curated_11
unknown

Not on your lists

comp(8356..8610)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2050_curated_12
Sporolactobacillus laevolacticus, Sporolactobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8705..9391
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Sporolactobacillus laevolacticus DSM 442 RepID=V6IXV1_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EST12248.1}; TaxID=1395513 species="Bacteria; Firmicutes; Bacilli; Bacillales; Sporolactobacillaceae; Sporolactobacillus.;" source="Sporolactobacillus laevolacticus DSM 442.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2050_curated_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9433..10041)
DNA (609bp) protein (203aa)
Glutaconyl-CoA decarboxylase subunit beta {ECO:0000313|EMBL:EJF42687.1}; EC=4.1.1.70 {ECO:0000313|EMBL:EJF42687.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
sodium ion-translocating decarboxylase subunit beta (EC:4.1.1.70)
glutaconyl-CoA decarboxylase subunit beta n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E333 rbh
SCNpilot_BF_INOC_scaffold_2050_curated_14
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(10525..10908)
DNA (384bp) protein (128aa)
carboxylesterase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E334
biotin/lipoyl attachment domain-containing protein
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_BF_INOC_scaffold_2050_curated_15
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(10924..11259)
DNA (336bp) protein (112aa)
sodium pump decarboxylase subunit gamma n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E335
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_BF_INOC_scaffold_2050_curated_16
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(11256..12647)
DNA (1392bp) protein (464aa)
oxaloacetate decarboxylase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E336 rbh
pyruvate/oxaloacetate carboxyltransferase rbh
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_BF_INOC_scaffold_2050_curated_17
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12854..13072)
DNA (219bp) protein (73aa)
Uncharacterized conserved protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R4K4_9CLOT
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC40089.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
putative membrane protein
SCNpilot_BF_INOC_scaffold_2050_curated_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13144..13683)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UXC0_CLOBA
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KIL08426.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
SCNpilot_BF_INOC_scaffold_2050_curated_19
unknown

Not on your lists

15496..15783
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2050_curated_20
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15941..16621)
DNA (681bp) protein (227aa)
Channel protein hemolysin III family n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9D2_9CLOT rbh
Channel protein hemolysin III family {ECO:0000313|EMBL:CDD74570.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_2050_curated_21
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16633..17808)
DNA (1176bp) protein (392aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
D-alanine/D-alanine ligase (EC:6.3.2.4) rbh
D-alanine--D-alanine ligase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36EA6 rbh
SCNpilot_BF_INOC_scaffold_2050_curated_22
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17832..19409)
DNA (1578bp) protein (526aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Clostridium sp. CAG:678 RepID=R5L2Z3_9CLOT rbh
Mur ligase middle domain-containing protein rbh
SCNpilot_BF_INOC_scaffold_2050_curated_23
Gracilibacillus halophilus, Gracilibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19406..20179)
DNA (774bp) protein (258aa)
alpha/beta hydrolase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36EA8
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ENH97887.1}; TaxID=1308866 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Gracilibacillus.;" source="Gracilibacillus halophilus YIM-C55.5.;"
alpha/beta hydrolase fold protein
SCNpilot_BF_INOC_scaffold_2050_curated_24
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20511..21302)
DNA (792bp) protein (264aa)
Amidohydrolase 2 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NRD6_9CLOT rbh
Amidohydrolase 2 {ECO:0000313|EMBL:CDC08796.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
amidohydrolase 2
SCNpilot_BF_INOC_scaffold_2050_curated_25
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21332..23146)
DNA (1815bp) protein (605aa)
GTP-binding protein TypA n=1 Tax=Clostridium sp. CAG:557 RepID=R6GGV3_9CLOT rbh
GTP-binding protein TypA {ECO:0000313|EMBL:CDB23650.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
GTP-binding protein TypA/BipA rbh
SCNpilot_BF_INOC_scaffold_2050_curated_26
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23306..24364
DNA (1059bp) protein (353aa)
Methicillin resistance protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LWE7_9FIRM rbh
Methicillin resistance protein rbh
Methicillin resistance protein {ECO:0000313|EMBL:CDZ23995.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2050_curated_27
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24358..24891
DNA (534bp) protein (178aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
Alanine racemase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U411_ETHHY
SCNpilot_BF_INOC_scaffold_2050_curated_28
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24947..25456
DNA (510bp) protein (170aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Alanine racemase n=1 Tax=Clostridium sp. CAG:356 RepID=R6YL49_9CLOT
SCNpilot_BF_INOC_scaffold_2050_curated_29
unknown

Not on your lists

comp(25496..25750)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2050_curated_30
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25957..27225
DNA (1269bp) protein (423aa)
Metal dependent phosphohydrolase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QPM7_ACEAZ rbh
metal dependent phosphohydrolase rbh
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ADL12468.1}; TaxID=574087 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Acetohalobium.;" source="Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288).;"
Displaying items 1-30 of 39 in total

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