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SCNpilot_BF_INOC_scaffold_5258_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_5258_curated_1
unknown

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comp(308..841)
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_5258_curated_2
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1001..1468
DNA (468bp) protein (156aa)
Band 7 protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KN23_CLOPH
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:ABX41522.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
SCNpilot_BF_INOC_scaffold_5258_curated_3
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1575..1895)
DNA (321bp) protein (107aa)
multidrug transporter n=1 Tax=Clostridium tyrobutyricum RepID=UPI0003655FF2
Quaternary ammonium compound-resistance protein SugE {ECO:0000313|EMBL:CDL92066.1}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_5258_curated_4
unknown

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comp(2179..2427)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_5258_curated_trna_1
unknown

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comp(2386..2458)
DNA (73bp)
transferRNA Ala
SCNpilot_BF_INOC_scaffold_5258_curated_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2609..3313
DNA (705bp) protein (235aa)
uridylate kinase (EC:2.7.4.22) rbh
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Uridylate kinase n=2 Tax=Ruminococcus RepID=D4L8A4_9FIRM rbh
SCNpilot_BF_INOC_scaffold_5258_curated_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3565..3864
DNA (300bp) protein (100aa)
Ribosome-recycling factor n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKI8_9FIRM
frr; Ribosome-recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_5258_curated_7
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4074..4793
DNA (720bp) protein (240aa)
uppS; Isoprenyl transferase (EC:2.5.1.-) rbh
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Isoprenyl transferase n=1 Tax=Clostridium sp. CAG:557 RepID=R6GQI9_9CLOT
SCNpilot_BF_INOC_scaffold_5258_curated_8
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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4794..5651
DNA (858bp) protein (286aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
Phosphatidate cytidylyltransferase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8S0_ETHHY
phosphatidate cytidylyltransferase
SCNpilot_BF_INOC_scaffold_5258_curated_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5664..6812
DNA (1149bp) protein (383aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267) rbh
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWJ8_9CLOT rbh
SCNpilot_BF_INOC_scaffold_5258_curated_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6762..7301)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AFQ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41427.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SCNpilot_BF_INOC_scaffold_5258_curated_11
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8440..8790
DNA (351bp) protein (117aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium sp. CAG:242 RepID=R6DCQ7_9CLOT
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
Displaying 12 items

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