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SCNpilot_BF_INOC_scaffold_1710_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1710_curated_1
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..214
DNA (213bp) protein (71aa)
Transcription termination/antitermination protein NusG n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CHC4_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
NusG antitermination factor
SCNpilot_BF_INOC_scaffold_1710_curated_2
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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318..743
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H944_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
LSU ribosomal protein L11P
SCNpilot_BF_INOC_scaffold_1710_curated_3
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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803..1507
DNA (705bp) protein (235aa)
50S ribosomal protein L1 n=1 Tax=Clostridium sp. CAG:964 RepID=R6UB17_9CLOT rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
rplA; 50S ribosomal protein L1 rbh
SCNpilot_BF_INOC_scaffold_1710_curated_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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1705..2610
DNA (906bp) protein (302aa)
Fused 50S ribosomal proteins L10 and L7/L12 (Modular protein) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCU3_9BACT
rplJL; fused 50S ribosomal proteins L10 and L7/L12
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
SCNpilot_BF_INOC_scaffold_1710_curated_5
unknown

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2946..3176
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1710_curated_6
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3240..4415)
DNA (1176bp) protein (392aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
S-adenosylmethionine synthetase (EC:2.5.1.6) rbh
S-adenosylmethionine synthase n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F639_CLOS4 rbh
SCNpilot_BF_INOC_scaffold_1710_curated_7
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(4630..5166)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LS93_TEPAE
conserved membrane protein of unknown function
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
SCNpilot_BF_INOC_scaffold_1710_curated_8
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5810..6280
DNA (471bp) protein (157aa)
Translation initiation factor IF-3 n=1 Tax=Eubacterium sp. CAG:202 RepID=R6MQA2_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
translation initiation factor IF-3
SCNpilot_BF_INOC_scaffold_1710_curated_9
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6299..6496
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHG8_9CLOT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
LSU ribosomal protein L35P
SCNpilot_BF_INOC_scaffold_1710_curated_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6522..6881
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8E5_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
50S ribosomal protein L20
SCNpilot_BF_INOC_scaffold_1710_curated_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6940..7752
DNA (813bp) protein (271aa)
rRNA methylases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L801_9FIRM
rRNA methylases
rRNA methylases {ECO:0000313|EMBL:CBL15746.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
SCNpilot_BF_INOC_scaffold_1710_curated_12
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7830..9098
DNA (1269bp) protein (423aa)
DNA protecting protein DprA n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6EFR6_9FIRM rbh
DNA protecting protein DprA {ECO:0000313|EMBL:CDA88887.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
DNA protecting protein DprA
SCNpilot_BF_INOC_scaffold_1710_curated_13
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9100..11202
DNA (2103bp) protein (701aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
DNA topoisomerase I (EC:5.99.1.2) rbh
DNA topoisomerase I n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002E5875B rbh
SCNpilot_BF_INOC_scaffold_1710_curated_14
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11238..12596
DNA (1359bp) protein (453aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Clostridium sp. CAG:557 RepID=R6GDY8_9CLOT rbh
tRNA:m(5)U-54 methyltransferase rbh
SCNpilot_BF_INOC_scaffold_1710_curated_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12599..13582
DNA (984bp) protein (328aa)
plsX; putative glycerol-3-phosphate acyltransferase PlsY (together with PlsY) (EC:2.3.1.15) rbh
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Phosphate acyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB93_9FIRM rbh
SCNpilot_BF_INOC_scaffold_1710_curated_16
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13645..14109
DNA (465bp) protein (155aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=2 Tax=Clostridium RepID=A7VXH0_9CLOT
Displaying 16 items

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