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SCNpilot_BF_INOC_scaffold_2597_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2597_curated_1
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..2231
DNA (2229bp) protein (743aa)
Protein translocase subunit SecA n=1 Tax=Clostridium sp. MSTE9 RepID=J0N4N6_9CLOT rbh
secA; Protein translocase subunit SecA rbh
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_2597_curated_2
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2304..2714
DNA (411bp) protein (137aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Brevibacillus panacihumi W25 RepID=V6MAB4_9BACL
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:EST52298.1}; TaxID=1408254 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_BF_INOC_scaffold_2597_curated_3
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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2851..4200
DNA (1350bp) protein (450aa)
Glycoside hydrolase family 18 n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R982_CLOSW rbh
glycoside hydrolase rbh
Tax=BJP_IG2069_Clostridiales_48_15
SCNpilot_BF_INOC_scaffold_2597_curated_4
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4379..4663
DNA (285bp) protein (95aa)
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6D5V0_9FIRM
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit {ECO:0000313|EMBL:CDA73207.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
aspartyl/glutamyl-tRNA amidotransferase subunit C
SCNpilot_BF_INOC_scaffold_2597_curated_5
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4672..5430
DNA (759bp) protein (253aa)
glutamyl-tRNA(Gln) amidotransferase subunit alpha (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNM4_CELLD
SCNpilot_BF_INOC_scaffold_2597_curated_6
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5379..6116
DNA (738bp) protein (246aa)
glutamyl-tRNA(Gln) amidotransferase subunit alpha (EC:3.5.1.4) rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNM4_CELLD rbh
SCNpilot_BF_INOC_scaffold_2597_curated_7
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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6113..7531
DNA (1419bp) protein (473aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC:6.3.5.6) rbh
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MKR4_9FIRM rbh
SCNpilot_BF_INOC_scaffold_2597_curated_8
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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7536..8846
DNA (1311bp) protein (437aa)
aspartyl-tRNA synthetase (EC:6.1.1.12) rbh
Aspartyl-tRNA synthetase n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MFU8_9FIRM rbh
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CDB94879.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
SCNpilot_BF_INOC_scaffold_2597_curated_9
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9131..9751
DNA (621bp) protein (207aa)
Phosphate transport system regulatory protein PhoU n=1 Tax=Clostridium termitidis CT1112 RepID=S0FML0_9CLOT
Phosphate transport system regulatory protein PhoU {ECO:0000313|EMBL:EMS69733.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
phosphate transport system regulatory protein PhoU
SCNpilot_BF_INOC_scaffold_2597_curated_10
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9744..10739
DNA (996bp) protein (332aa)
Phosphate/sulfate permease n=1 Tax=Clostridium termitidis CT1112 RepID=S0FFH3_9CLOT rbh
Phosphate/sulfate permease {ECO:0000313|EMBL:EMS69675.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
pit; putative low-affinity inorganic phosphate transporter rbh
SCNpilot_BF_INOC_scaffold_2597_curated_11
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10754..11098
DNA (345bp) protein (115aa)
Hydrogenase expression/synthesis HypA n=7 Tax=Clostridium thermocellum RepID=A3DJT5_CLOTH
hydrogenase nickel incorporation protein HypA
Hydrogenase expression/synthesis HypA {ECO:0000313|EMBL:ABN54214.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_BF_INOC_scaffold_2597_curated_12
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11129..11797
DNA (669bp) protein (223aa)
Hydrogenase accessory protein HypB n=6 Tax=Clostridium thermocellum RepID=A3DJT4_CLOTH
hydrogenase nickel incorporation protein HypB
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:ABN54213.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_BF_INOC_scaffold_2597_curated_13
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11749..12864
DNA (1116bp) protein (372aa)
(NiFe) hydrogenase maturation protein HypF n=1 Tax=Clostridium thermocellum JW20 RepID=D1NR89_CLOTM rbh
(NiFe) hydrogenase maturation protein HypF rbh
(NiFe) hydrogenase maturation protein HypF {ECO:0000313|EMBL:ABN54212.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_BF_INOC_scaffold_2597_curated_14
unknown

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comp(13143..13613)
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2597_curated_15
unknown

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14454..14645
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2597_curated_16
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16452..16730)
DNA (279bp) protein (93aa)
coenzyme F390 synthetase (EC:6.2.1.30)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Coenzyme F390 synthetase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LT98_CLOCD
Displaying 16 items

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