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SCNpilot_BF_INOC_scaffold_1864_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1864_curated_1
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..791)
DNA (789bp) protein (263aa)
Sugar phosphate permease n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LWY0_CLOCD
sugar phosphate permease
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_1864_curated_2
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(858..1640)
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KQA5_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX40414.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
SCNpilot_BF_INOC_scaffold_1864_curated_3
Peptostreptococcaceae bacterium CM2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1682..2671)
DNA (990bp) protein (330aa)
Methionine-R-sulfoxide reductase n=1 Tax=Eubacteriaceae bacterium CM2 RepID=V9HV96_9FIRM rbh
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EHL17331.1}; TaxID=796939 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium CM2.;"
msrB; peptide methionine sulfoxide reductase msrA/msrB rbh
SCNpilot_BF_INOC_scaffold_1864_curated_4
Listeria innocua, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2708..3373)
DNA (666bp) protein (222aa)
Uracil-DNA glycosylase 2 {ECO:0000255|HAMAP-Rule:MF_00148}; Short=UDG 2 {ECO:0000255|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_00148};; TaxID=272626 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria innocua serovar 6a (strain CLIP 11262).;"
Uracil-DNA glycosylase 2 n=1 Tax=Listeria innocua serovar 6a (strain CLIP 11262) RepID=UNG2_LISIN rbh
uracil-DNA glycosylase rbh
SCNpilot_BF_INOC_scaffold_1864_curated_5
Bacillus cytotoxicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3360..3941)
DNA (582bp) protein (194aa)
Septum formation protein Maf n=1 Tax=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) RepID=MAF_BACCN
Maf-like protein
Septum formation protein Maf {ECO:0000255|HAMAP-Rule:MF_00528}; TaxID=315749 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus subsp. cytotoxis (strain NVH 391-98).;"
SCNpilot_BF_INOC_scaffold_1864_curated_6
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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4510..4968
DNA (459bp) protein (153aa)
Putative uncharacterized protein id=2718664 bin=GWC2_Clostridiales_40_7 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
hypothetical protein
Tax=BJP_IG2069_Clostridiales_48_15
SCNpilot_BF_INOC_scaffold_1864_curated_7
unknown

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5861..6115
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1864_curated_8
unknown

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6067..6843
DNA (777bp) protein (259aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1864_curated_9

Not on your lists

6872..7873
DNA (1002bp) protein (334aa)
Putative ATPbinding phosphate transport protein n=1 Tax=termite gut metagenome RepID=S0DDL5_9ZZZZ rbh
Putative ATPbinding phosphate transport protein {ECO:0000313|EMBL:CCO21087.1}; TaxID=433724 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="termite gut metagenome.;"
phosphate-binding protein
SCNpilot_BF_INOC_scaffold_1864_curated_10
unknown

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7875..8264
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1864_curated_11
Coprobacillus sp. CAG:826, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8439..9989)
DNA (1551bp) protein (517aa)
Transcriptional regulator n=1 Tax=Coprobacillus sp. CAG:826 RepID=R7DL91_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDD91215.1}; TaxID=1262857 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:826.;"
Predicted transcriptional regulators
SCNpilot_BF_INOC_scaffold_1864_curated_12
unknown

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comp(10284..10595)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1864_curated_13
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10794..10970)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H7Q0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF41328.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1864_curated_14
unknown

Not on your lists

comp(11100..11657)
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1864_curated_15
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11662..11943)
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0AF62_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ50885.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
SCNpilot_BF_INOC_scaffold_1864_curated_16
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11971..14301)
DNA (2331bp) protein (777aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YC53_9FIRM rbh
UvrD/REP helicase rbh
SCNpilot_BF_INOC_scaffold_1864_curated_17
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15015..15935)
DNA (921bp) protein (307aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D4Y3_9CLOT
AraC-type DNA-binding domain-containing proteins
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_1864_curated_18
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

16009..16722
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5HE83_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CCY23182.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
trehalose utilization protein rbh
SCNpilot_BF_INOC_scaffold_1864_curated_19
Thermoanaerobacter siderophilus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

16759..17847
DNA (1089bp) protein (363aa)
Putative dehydrogenase n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9AC24_9THEO rbh
Putative dehydrogenase {ECO:0000313|EMBL:EIV99576.1}; TaxID=880478 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter siderophilus SR4.;"
oxidoreductase domain-containing protein rbh
SCNpilot_BF_INOC_scaffold_1864_curated_20
unknown

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comp(18090..18494)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1864_curated_21
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18753..19640
DNA (888bp) protein (296aa)
Xylose isomerase domain-containing protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FFP6_9CLOT rbh
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:EMS69845.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
xylose isomerase domain-containing protein rbh
SCNpilot_BF_INOC_scaffold_1864_curated_22
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19840..20742
DNA (903bp) protein (301aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
HPr kinase/phosphorylase n=1 Tax=Clostridium sp. CAG:242 RepID=R6CJ76_9CLOT rbh
HPr kinase rbh
SCNpilot_BF_INOC_scaffold_1864_curated_23
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20780..21736
DNA (957bp) protein (319aa)
Transcriptional regulator/sugar kinase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5YQF6_9FIRM rbh
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:CDA18832.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
ROK family protein rbh
SCNpilot_BF_INOC_scaffold_1864_curated_24
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21761..22669
DNA (909bp) protein (303aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.3.1.98) rbh
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NT09_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1864_curated_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22711..23595
DNA (885bp) protein (295aa)
UPF0042 nucleotide-binding protein HMPREF1141_2478 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H5J4_9CLOT rbh
Nucleotide-binding protein HMPREF1141_2478 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
UPF0042 nucleotide-binding protein rbh
SCNpilot_BF_INOC_scaffold_1864_curated_26
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23609..24484
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RCA8_9FIRM
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1864_curated_27
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24498..27926
DNA (3429bp) protein (1143aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7) rbh
DNA polymerase III alpha subunit n=1 Tax=Clostridium leptum CAG:27 RepID=R6N6Q6_9CLOT rbh
SCNpilot_BF_INOC_scaffold_1864_curated_28
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28067..29035
DNA (969bp) protein (323aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
6-phosphofructokinase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6C0_ETHHY rbh
6-phosphofructokinase rbh
SCNpilot_BF_INOC_scaffold_1864_curated_29
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29398..29598)
DNA (201bp) protein (67aa)
PF08984 domain protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HX55_9FIRM
PF08984 domain protein {ECO:0000313|EMBL:CDB41595.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1864_curated_30
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29622..29885)
DNA (264bp) protein (88aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
ftsH; Cell division protease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LS53_9FIRM
Displaying 30 items

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