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SCNpilot_BF_INOC_scaffold_1945_curated_2

Organism: scnpilot_dereplicated_Clostridiales_2

partial RP 42 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 12 / 38 MC: 2
Location: comp(440..1159)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=R6MY49_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 67.6
  • Coverage: 238.0
  • Bit_score: 323
  • Evalue 9.20e-86
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.6
  • Coverage: 238.0
  • Bit_score: 323
  • Evalue 1.30e-85
RNA polymerase, sigma 29 subunit, SigE similarity KEGG
DB: KEGG
  • Identity: 67.8
  • Coverage: 230.0
  • Bit_score: 304
  • Evalue 1.60e-80
  • rbh

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Taxonomy

Clostridium leptum CAG:27 → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 720
ATGATCAGACAGGCTAAGGACTCACTAAAAAAGCTAATACTGAAGCTGTTTATGAAACTGGGAATCATAGACGAACTTTATTACATAAACGGACCCCAAATATTACCCGCACCTCTTTCCAAGGAGGACGAACAGGAGCTTGTCAATCGATATGCCGCCGGTGACCAGTCTGTCCGAGAGGAGTTGATCACCCATAATTTGCGATTGGTGGTTTATATTGCCCGCAAGTTCAACGCGGCGGGTGCGGGAATAGAAGACCTGATTTCCATTGGGACCATCGGACTGATCAAGGCTGTCAATACCTTCTGCCCGGATAAGAACATCAAGCTGGCGACCTATGCATCCCGCTGTATAGAAAACGAAATATTAATGTATTTGCGAAAAACAAATTTTTTGAAAACCGAAGTTTCCATTGACGAACCATTGAATATTGATTGGGACGGTAACGAGCTATTGTTATCGGATGTTCTGGGTAGTGACCCGGACGTGGTCAACCGGGGTATTGAGCTGGAGGATGAGAAAAGTCTTGTGGTCAAGCTGGTCAACAAGCTTTCCCGTAGAGAACGGCAAATCATGCAGATGCGGTTCGGCTTTAACGGCTACAGTGAGCATACCCAAAAAGAGGTTGCCGATAATCTGGGAATTTCTCAGTCCTATATATCAAGACTGGAAAAGAGGATTATTGAGCGCTTGAAACGGGAAATGGAGCGAGTGGGATGA
PROTEIN sequence
Length: 240
MIRQAKDSLKKLILKLFMKLGIIDELYYINGPQILPAPLSKEDEQELVNRYAAGDQSVREELITHNLRLVVYIARKFNAAGAGIEDLISIGTIGLIKAVNTFCPDKNIKLATYASRCIENEILMYLRKTNFLKTEVSIDEPLNIDWDGNELLLSDVLGSDPDVVNRGIELEDEKSLVVKLVNKLSRRERQIMQMRFGFNGYSEHTQKEVADNLGISQSYISRLEKRIIERLKREMERVG*