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SCNpilot_BF_INOC_scaffold_1945_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1945_curated_1
unknown

Not on your lists

3..167
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1945_curated_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(440..1159)
DNA (720bp) protein (240aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=R6MY49_9CLOT rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
RNA polymerase, sigma 29 subunit, SigE rbh
SCNpilot_BF_INOC_scaffold_1945_curated_3
unknown

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comp(1243..1395)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1945_curated_4
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1415..2275)
DNA (861bp) protein (287aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; Stage II sporulation protein GA {ECO:0000256|PIRNR:PIRNR018571}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
Sigma-E processing peptidase SpoIIGA n=1 Tax=Clostridium sp. CAG:557 RepID=R6HBY4_9CLOT
sigma-E processing peptidase SpoIIGA
SCNpilot_BF_INOC_scaffold_1945_curated_5
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2433..2693)
DNA (261bp) protein (87aa)
Coat F domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N2C8_9CLOT
Coat F domain protein {ECO:0000313|EMBL:EJF40914.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_curated_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2713..2898)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFQ4_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23302.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1945_curated_7
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3023..3370)
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
mRNA interferase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LT80_9FIRM
transcriptional modulator of MazE/toxin MazF
SCNpilot_BF_INOC_scaffold_1945_curated_8
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3538..5280)
DNA (1743bp) protein (581aa)
L-amino-acid oxidase (EC:1.4.3.2) rbh
L-amino-acid oxidase {ECO:0000313|EMBL:ADY56217.1}; EC=1.4.3.2 {ECO:0000313|EMBL:ADY56217.1};; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
L-amino-acid oxidase n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T0S8_SYNGF rbh
SCNpilot_BF_INOC_scaffold_1945_curated_9
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5364..5834)
DNA (471bp) protein (157aa)
ndk; nucleoside diphosphate kinase Ndk (EC:2.7.4.6)
Nucleoside diphosphate kinase Ndk {ECO:0000313|EMBL:AFA48294.1}; EC=2.7.4.6 {ECO:0000313|EMBL:AFA48294.1};; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
Nucleoside diphosphate kinase Ndk n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LG06_ACEWD
SCNpilot_BF_INOC_scaffold_1945_curated_10
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5836..6822)
DNA (987bp) protein (329aa)
Oxidoreductase domain protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZVZ9_MAHA5 rbh
oxidoreductase domain-containing protein rbh
Oxidoreductase domain protein {ECO:0000313|EMBL:AEE95373.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
SCNpilot_BF_INOC_scaffold_1945_curated_11
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6837..7328)
DNA (492bp) protein (164aa)
putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EWM54867.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
SCNpilot_BF_INOC_scaffold_1945_curated_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7344..8879)
DNA (1536bp) protein (512aa)
YjeF domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU46_9CLOT rbh
carbohydrate kinase rbh
Carbohydrate kinase {ECO:0000313|EMBL:CDZ23730.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1945_curated_13
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8881..9252)
DNA (372bp) protein (124aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Ruminococcus albus 8 RepID=E9SAU8_RUMAL
holo-acyl-carrier-protein synthase
SCNpilot_BF_INOC_scaffold_1945_curated_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9233..9766)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MY43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC03740.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_curated_15
unknown

Not on your lists

comp(9929..10840)
DNA (912bp) protein (304aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1945_curated_16
Haloferax sp. Arc-Hr, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10969..12099)
DNA (1131bp) protein (377aa)
Beta-glucanase/beta-glucan synthetase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EAS2_THECK
Beta-galactosidase {ECO:0000313|EMBL:CQR52423.1}; TaxID=1476858 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. Arc-Hr.;"
beta-glucanase/beta-glucan synthetase
SCNpilot_BF_INOC_scaffold_1945_curated_17
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12452..13666
DNA (1215bp) protein (405aa)
UPF0348 protein CLOLEP_03330 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXK5_9CLOT rbh
UPF0348 protein BN578_01762 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein rbh
SCNpilot_BF_INOC_scaffold_1945_curated_18
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13663..13929
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MY67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60503.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1945_curated_19
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13978..14580
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI0002E87611
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24474.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_1945_curated_20
unknown

Not on your lists

comp(14653..15459)
DNA (807bp) protein (269aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1945_curated_21

Not on your lists

15827..16060
DNA (234bp) protein (78aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K1Y0Y9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD30851.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
glycosyl hydrolase family 3
Displaying 21 items

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