ggKbase home page

OR_07242016_12_scaffold_455

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07242016_12_scaffold_455_trna_1
unknown

Not on your lists

146..219
DNA (74bp)
transferRNA Thr
OR_07242016_12_scaffold_455_trna_2
unknown

Not on your lists

277..359
DNA (83bp)
transferRNA Tyr
OR_07242016_12_scaffold_455_trna_3
unknown

Not on your lists

366..439
DNA (74bp)
transferRNA Gly
OR_07242016_12_scaffold_455_trna_4
unknown

Not on your lists

540..611
DNA (72bp)
transferRNA Thr
OR_07242016_12_scaffold_455_1
RLO_Sulfuricurvum_43_24, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

711..1868
DNA (1158bp) protein (386aa)
elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu Tax=Bacteria RepID=K7T3F9_9HELI
Tax=RIFCSPLOWO2_12_FULL_Sulfuricurvum_43_24_curated
OR_07242016_12_scaffold_455_trna_5
unknown

Not on your lists

2082..2154
DNA (73bp)
transferRNA Trp
OR_07242016_12_scaffold_455_2
Sulfuricurvum sp. MLSB, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

2222..2407
DNA (186bp) protein (62aa)
Protein translocase subunit SecE Tax=Sulfuricurvum RepID=E4TX70_SULKY
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum sp. MLSB.;"
secE; preprotein translocase subunit SecE
OR_07242016_12_scaffold_455_3
RIFOXYD12_FULL_Sulfuricurvum_44_77_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

2417..2947
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SPZ4_9HELI
transcription antitermination protein nusg
Tax=RIFOXYD12_FULL_Sulfuricurvum_44_77_curated
OR_07242016_12_scaffold_455_4
Candidatus Sulfuricurvum sp. RIFRC-1, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


2969..3394
DNA (426bp) protein (142aa)
50S ribosomal protein L11 Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SCG4_9HELI
50S ribosomal protein L11p
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Candidatus Sulfuricurvum sp. RIFRC-1.;"
OR_07242016_12_scaffold_455_5
Candidatus Sulfuricurvum sp. RIFRC-1, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


3463..4158
DNA (696bp) protein (232aa)
50S ribosomal protein L1 Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7T3F4_9HELI
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Candidatus Sulfuricurvum sp. RIFRC-1.;"
OR_07242016_12_scaffold_455_6
Candidatus Sulfuricurvum sp. RIFRC-1, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


4260..4739
DNA (480bp) protein (160aa)
50S ribosomal protein L10 Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7S6L6_9HELI
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Candidatus Sulfuricurvum sp. RIFRC-1.;"
OR_07242016_12_scaffold_455_7
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

4802..5173
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4TX65_SULKY
50S ribosomal protein L12p
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
OR_07242016_12_scaffold_455_8
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

5344..9489
DNA (4146bp) protein (1382aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4TX64_SULKY
OR_07242016_12_scaffold_455_9
Sulfuricurvum sp. MLSB, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

9482..13990
DNA (4509bp) protein (1503aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum sp. MLSB.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4TX63_SULKY
OR_07242016_12_scaffold_455_10
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


14159..14539
DNA (381bp) protein (127aa)
30S ribosomal protein S12 Tax=Sulfuricurvum RepID=E4TX62_SULKY
30S ribosomal protein S12p
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
OR_07242016_12_scaffold_455_11
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists


14612..15079
DNA (468bp) protein (156aa)
30S ribosomal protein S7 Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4TX61_SULKY
30S ribosomal protein S7p
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
OR_07242016_12_scaffold_455_12
RLO_Sulfuricurvum_43_24, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

15155..17239
DNA (2085bp) protein (695aa)
Elongation factor G Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SFU1_9HELI
elongation factor G
Tax=RIFCSPLOWO2_12_FULL_Sulfuricurvum_43_24_curated
OR_07242016_12_scaffold_455_13
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17370..17813
DNA (444bp) protein (148aa)
Thioesterase superfamily protein Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RUZ5_ASTEC
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ADU14195.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
OR_07242016_12_scaffold_455_14
Arcobacter sp. L, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17803..18720)
DNA (918bp) protein (306aa)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter sp. L.;"
hypothetical protein Tax=Colwellia piezophila RepID=UPI00037C4AA8
glutaminase
OR_07242016_12_scaffold_455_15
Sulfuricurvum sp. MLSB, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18741..19499)
DNA (759bp) protein (253aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum sp. MLSB.;"
Uncharacterized protein Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7T3E4_9HELI
hypothetical protein
OR_07242016_12_scaffold_455_16
Candidatus Sulfuricurvum sp. RIFRC-1, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19565..20464)
DNA (900bp) protein (300aa)
Peptide chain release factor 2 Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7S6L0_9HELI
hypothetical protein
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Candidatus Sulfuricurvum sp. RIFRC-1.;"
OR_07242016_12_scaffold_455_17
Sulfuricurvum sp. MLSB, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

20523..21344
DNA (822bp) protein (274aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum sp. MLSB.;"
Pantothenate synthetase Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SFT4_9HELI
hypothetical protein
OR_07242016_12_scaffold_455_18
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

21346..21873
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4TX46_SULKY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADR34912.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
OR_07242016_12_scaffold_455_19
RIFOXYD12_FULL_Sulfuricurvum_44_77_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21892..23742)
DNA (1851bp) protein (617aa)
Uncharacterized protein Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SCE7_9HELI
hypothetical protein
Tax=RIFOXYD12_FULL_Sulfuricurvum_44_77_curated
OR_07242016_12_scaffold_455_20
Candidatus Sulfuricurvum sp. RIFRC-1, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23708..24010)
DNA (303bp) protein (101aa)
Flagellar hook-basal body complex protein FliE Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7T3E1_9HELI
hypothetical protein
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Candidatus Sulfuricurvum sp. RIFRC-1.;"
OR_07242016_12_scaffold_455_21
Candidatus Sulfuricurvum sp. RIFRC-1, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24029..24523)
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7S6K6_9HELI
hypothetical protein
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Candidatus Sulfuricurvum sp. RIFRC-1.;"
OR_07242016_12_scaffold_455_22
RIFOXYD12_FULL_Sulfuricurvum_44_77_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24534..24965)
DNA (432bp) protein (144aa)
Flagellar basal body rod protein FlgB Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4TX42_SULKY
flagellar basal-body rod protein flgb
Tax=RIFOXYD12_FULL_Sulfuricurvum_44_77_curated
OR_07242016_12_scaffold_455_23
RIFOXYD12_FULL_Sulfuricurvum_44_77_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

25090..26268
DNA (1179bp) protein (393aa)
Uncharacterized protein Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SPX4_9HELI
cell cycle protein
Tax=RIFOXYD12_FULL_Sulfuricurvum_44_77_curated
OR_07242016_12_scaffold_455_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

26265..26639
DNA (375bp) protein (125aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SCD9_9HELI
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 29 items

View Taxonomy