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RTP_09252017_15_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 695 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_09252017_15_scaffold_2_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3..140
DNA (138bp) protein (46aa)
UDP-glucuronate decarboxylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NUN2_9SPHI
epimerase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

145..1017
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003715FA0
dTDP-4-dehydrorhamnose reductase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_trna_22
unknown

Not on your lists

comp(1377..1447)
DNA (71bp)
transferRNA Gln
RTP_09252017_15_scaffold_2_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1592..2263
DNA (672bp) protein (224aa)
G-D-S-L family lipolytic protein n=1 Tax=Niabella aurantiaca RepID=UPI00036DC2B2
G-D-S-L family lipolytic protein
G-D-S-L family lipolytic protein {ECO:0000313|EMBL:AHF14396.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RTP_09252017_15_scaffold_2_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(2278..3528)
DNA (1251bp) protein (417aa)
Tyrosine--tRNA ligase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSW5_CHIPD
tyrosyl-tRNA synthetase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3662..5518
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000379192E
molecular chaperone
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

5685..5912
DNA (228bp) protein (76aa)
30S ribosomal protein S21 n=1 Tax=Niabella aurantiaca RepID=UPI000368EE6D
30S ribosomal protein S21
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

5987..6886
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364BF1F
integrase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7014..7313
DNA (300bp) protein (100aa)
ribosome hibernation protein yhbh n=1 Tax=Segetibacter koreensis RepID=UPI000361BAD8
sigma-54 modulation protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_trna_1
unknown

Not on your lists

7517..7589
DNA (73bp)
transferRNA Thr
RTP_09252017_15_scaffold_2_trna_2
unknown

Not on your lists

7602..7684
DNA (83bp)
transferRNA Tyr
RTP_09252017_15_scaffold_2_trna_3
unknown

Not on your lists

7757..7829
DNA (73bp)
transferRNA Gly
RTP_09252017_15_scaffold_2_trna_4
unknown

Not on your lists

7850..7921
DNA (72bp)
transferRNA Thr
RTP_09252017_15_scaffold_2_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

8052..9239
DNA (1188bp) protein (396aa)
elongation factor Tu n=1 Tax=Segetibacter koreensis RepID=UPI000378845C
translation elongation factor 1A (EF-1A/EF-Tu)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_trna_5
unknown

Not on your lists

9308..9378
DNA (71bp)
transferRNA Trp
RTP_09252017_15_scaffold_2_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9433..9627
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036590D7
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Preprotein translocase subunit SecE
RTP_09252017_15_scaffold_2_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

9630..10247
DNA (618bp) protein (206aa)
transcription antitermination protein NusG n=1 Tax=Segetibacter koreensis RepID=UPI00037098FC
transcription antitermination protein nusG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


10452..10895
DNA (444bp) protein (148aa)
50S ribosomal protein L11 n=1 Tax=Niabella aurantiaca RepID=UPI000372BDFE
50S ribosomal protein L11
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


10923..11615
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Segetibacter koreensis RepID=UPI00037ED38D
rplA; 50S ribosomal protein L1
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


11664..12350
DNA (687bp) protein (229aa)
50S ribosomal protein L10 n=1 Tax=Niabella aurantiaca RepID=UPI0003612CAB
50S ribosomal protein L10
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

12500..12868
DNA (369bp) protein (123aa)
50S ribosomal protein L7/L12 n=1 Tax=Niabella soli DSM 19437 RepID=H1NSW3_9SPHI
50S ribosomal protein L7
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13548..17351
DNA (3804bp) protein (1268aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=Segetibacter koreensis RepID=UPI0003755D57
DNA-directed RNA polymerase subunit beta
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

17422..21708
DNA (4287bp) protein (1429aa)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Segetibacter koreensis RepID=UPI0003677F0A
DNA-directed RNA polymerase subunit beta'
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

21851..22423
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003647985
outer membrane chaperone Skp
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

22478..23899
DNA (1422bp) protein (474aa)
Amino acid permease-associated region n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1XZE2_9SPHI
amino acid permease-associated protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

23900..24910
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000370AC64
PfkB domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

24919..25599
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E7B89
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(25665..26654)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000360ED6D
oxidoreductase domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_09252017_15_scaffold_2_23
Paraglaciecola agarilytica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26789..27988
DNA (1200bp) protein (400aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1125747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola agarilytica NO2.;"
anhydro-N-acetylmuramic acid kinase n=1 Tax=Pseudoalteromonas haloplanktis RepID=UPI0003146132
hypothetical protein
RTP_09252017_15_scaffold_2_24
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28093..28917)
DNA (825bp) protein (275aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XU27_FLAIG
putative sugar phosphate isomerase
Displaying items 1-30 of 695 in total

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