ggKbase home page

OR_08142018_2_5m_0_1um_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_2_5m_0_1um_scaffold_235_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..846)
DNA (846bp) protein (282aa)
stress-induced protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003820D8A
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

961..1905
DNA (945bp) protein (315aa)
Serine/Threonine protein kinase id=1342772 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Serine/threonine protein kinase
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1916..2824
DNA (909bp) protein (303aa)
Serine/threonine protein phosphatase id=1342773 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Ser/Thr phosphatase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_1um_scaffold_235_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2899..3630
DNA (732bp) protein (244aa)
RNAse PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] id=12493757 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RNAse PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_1um_scaffold_235_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3750..4340
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase id=1342775 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
deoxyribonucleotide triphosphate pyrophosphatase
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4333..5511
DNA (1179bp) protein (393aa)
coproporphyrinogen III oxidase (EC:1.3.99.22)
coproporphyrinogen III oxidase n=1 Tax=Thiobacillus thioparus RepID=UPI0003637046
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_1um_scaffold_235_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5553..5756)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F3BB2
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_1um_scaffold_235_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5768..6691)
DNA (924bp) protein (308aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase I id=1338656 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_1um_scaffold_235_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6795..7544
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000373D4EC
ribonuclease I
Putative ribonuclease I {ECO:0000313|EMBL:AAZ98086.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_1um_scaffold_235_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7775..8098)
DNA (324bp) protein (108aa)
putative dissimilatory sulfite reductase id=12493797 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
dissimilatory sulfite reductase
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8184..9218)
DNA (1035bp) protein (345aa)
A/G-specific adenine glycosylase (EC:3.2.2.-)
adenine glycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003672504
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9284..11485)
DNA (2202bp) protein (734aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C4702
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98082.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_1um_scaffold_235_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11738..13774)
DNA (2037bp) protein (679aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C5CB8
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_1um_scaffold_235_trna_1
unknown

Not on your lists

comp(13856..13926)
DNA (71bp)
transferRNA Gly
OR_08142018_2_5m_0_1um_scaffold_235_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13986..14189
DNA (204bp) protein (68aa)
thiamine biosynthesis protein ThiS n=1 Tax=Thiobacillus thioparus RepID=UPI0003600A30
thiamine-biosynthesis protein ThiS
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14277..15080
DNA (804bp) protein (268aa)
thiazole synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B07CD
thiG; thiazole synthase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_1um_scaffold_235_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15083..15784
DNA (702bp) protein (234aa)
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000380F2EC
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15815..16450
DNA (636bp) protein (212aa)
Multiple antibiotic resistance (MarC)-related proteins id=1350216 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
multiple antibiotic resistance (MarC)-like proteins
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16579..17487
DNA (909bp) protein (303aa)
6-phosphogluconate dehydrogenase (EC:1.1.1.44); K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44] id=12496688 bin=THIO_MID species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
6-phosphogluconate dehydrogenase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_1um_scaffold_235_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17489..18979
DNA (1491bp) protein (497aa)
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase id=1350218 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18979..19671
DNA (693bp) protein (231aa)
6-phosphogluconolactonase (EC:3.1.1.31)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E6919
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_1um_scaffold_235_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19672..20586)
DNA (915bp) protein (305aa)
Ribosome biogenesis GTPase A id=1368049 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GTPase
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20636..22036)
DNA (1401bp) protein (467aa)
aspA; aspartate ammonia-lyase (EC:4.2.1.2)
Aspartate ammonia-lyase id=1368050 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22050..22544
DNA (495bp) protein (165aa)
Thioredoxin id=1368051 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
thioredoxin
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22571..23077
DNA (507bp) protein (169aa)
Putative uncharacterized protein id=1368052 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23074..24339
DNA (1266bp) protein (422aa)
Putative uncharacterized protein id=1368053 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24339..24860
DNA (522bp) protein (174aa)
RND multidrug efflux membrane fusion protein MexE id=1368054 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RND multidrug efflux membrane fusion protein MexE
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_1um_scaffold_235_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24941..25459)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000382D9EF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_1um_scaffold_235_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25690..26325)
DNA (636bp) protein (212aa)
transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D1C17
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_1um_scaffold_235_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26339..28081)
DNA (1743bp) protein (581aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
prolyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F659B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 44 in total

View Taxonomy