ggKbase home page

OR_08142018_2_5m_0_2um_scaffold_105

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_2_5m_0_2um_scaffold_105_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128..592)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E3C39
vhtD; hydrogenase expression/formation protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(589..1890)
DNA (1302bp) protein (434aa)
Putative uncharacterized protein id=1367905 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1883..2674)
DNA (792bp) protein (264aa)
Putative uncharacterized protein id=1367904 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2832..3680)
DNA (849bp) protein (283aa)
Ni/Fe hydrogenase subunit gamma n=1 Tax=Thiobacillus thioparus RepID=UPI000374B60C
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3677..4798)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367CCBF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_105_6
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5205..5663)
DNA (459bp) protein (153aa)
Transposase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMR3_9GAMM
ISL3 family transposase
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
OR_08142018_2_5m_0_2um_scaffold_105_7
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

6387..6806
DNA (420bp) protein (140aa)
host cell attachment-required protein n=1 Tax=Mariprofundus ferrooxydans RepID=UPI00035EB348
Host attachment protein
Host attachment protein {ECO:0000313|EMBL:ADU65784.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (strain ATCC BAA-1389 / S5).;"
OR_08142018_2_5m_0_2um_scaffold_105_8
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6926..7516)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TN1_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD85764.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
OR_08142018_2_5m_0_2um_scaffold_105_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7716..12875)
DNA (5160bp) protein (1720aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:KIO47904.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Alpha amylase, catalytic subdomain n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJM7_THIDA
bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase
OR_08142018_2_5m_0_2um_scaffold_105_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12872..14665)
DNA (1794bp) protein (598aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMN0_9PROT
alpha amylase
OR_08142018_2_5m_0_2um_scaffold_105_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14700..17084)
DNA (2385bp) protein (795aa)
Alpha amylase, catalytic subdomain n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJM9_THIDA
Alpha amylase, catalytic subdomain {ECO:0000313|EMBL:AAZ97125.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
alpha amylase
OR_08142018_2_5m_0_2um_scaffold_105_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17051..18028)
DNA (978bp) protein (326aa)
Alpha amylase, catalytic subdomain n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJM9_THIDA
Alpha-amylase {ECO:0000313|EMBL:KIO47902.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
alpha amylase
OR_08142018_2_5m_0_2um_scaffold_105_13
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18222..18980
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K765_NITWC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ28742.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
OR_08142018_2_5m_0_2um_scaffold_105_14
R_Deltaproteobacteria_43_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19179..19454
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DUT9_THIND
protein of unknown function DUF1458
Tax=RIFCSPHIGHO2_12_FULL_Deltaproteobacteria_43_9_curated
OR_08142018_2_5m_0_2um_scaffold_105_15
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19531..20955)
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036B5B0B
Homospermidine synthase {ECO:0000313|EMBL:KIF80113.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
homospermidine synthase
OR_08142018_2_5m_0_2um_scaffold_105_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21532..21999
DNA (468bp) protein (156aa)
Transmembrane proetin, twin-arginine translocation pathway signal id=1345672 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_2um_scaffold_105_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22041..22355
DNA (315bp) protein (105aa)
sulfur oxidation protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F0623
sulfur compound chelating protein SoxZ
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_2um_scaffold_105_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22517..23092)
DNA (576bp) protein (192aa)
Membrane-bound hydrogenase component hupE id=1337334 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
membrane-bound hydrogenase component hupE
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_2um_scaffold_105_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23147..24937)
DNA (1791bp) protein (597aa)
Ni-Fe hydrogenase large chain (EC:1.12.99.6); K06281 hydrogenase large subunit [EC:1.12.99.6] id=12493972 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Ni-Fe hydrogenase large chain (EC:1.12.99.6)
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_2_5m_0_2um_scaffold_105_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24942..26204)
DNA (1263bp) protein (421aa)
heterodisulfide reductase n=1 Tax=Thiobacillus thioparus RepID=UPI000363E139
heterodisulfide reductase
Heterodisulfide reductase {ECO:0000313|EMBL:AAZ97329.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_2um_scaffold_105_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26201..26860)
DNA (660bp) protein (220aa)
Putative uncharacterized protein id=1337330 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26863..27942)
DNA (1080bp) protein (360aa)
Ni-Fe hydrogenase, small subunit (EC:1.12.99.6); K06282 hydrogenase small subunit [EC:1.12.99.6] id=12493976 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Ni-Fe hydrogenase, small subunit (EC:1.12.99.6)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_105_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28016..28447)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003650BE4
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_105_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28437..28910)
DNA (474bp) protein (158aa)
Peptidase M52, hydrogen uptake protein id=1337326 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
peptidase M52, hydrogen uptake protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29060..29305
DNA (246bp) protein (82aa)
hydrogenase expression/formation protein HupF/HypC; K04653 hydrogenase expression/formation protein HypC id=12493979 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hydrogenase expression/formation protein HupF/HypC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29298..29666
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B3330
hydrogenase expression/formation protein HypA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_105_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29684..30490
DNA (807bp) protein (269aa)
hydrogenase nickel incorporation protein HypB n=1 Tax=Thiobacillus thioparus RepID=UPI00037762BD
hydrogenase accessory protein HypB
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:AAZ97336.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_2um_scaffold_105_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30490..31602
DNA (1113bp) protein (371aa)
hydrogenase assembly protein HupF n=1 Tax=Thiobacillus thioparus RepID=UPI0003674329
hydrogenase expression/formation protein HypD
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:AAZ97337.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_2_5m_0_2um_scaffold_105_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31595..33820
DNA (2226bp) protein (742aa)
hydrogenase maturation protein HypF n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D68C2
Hydrogenase maturation protein HypF {ECO:0000313|EMBL:AAZ97338.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hydrogenase maturation protein HypF
OR_08142018_2_5m_0_2um_scaffold_105_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33829..34833
DNA (1005bp) protein (335aa)
hydrogenase expression protein HypE n=1 Tax=Thiobacillus thioparus RepID=UPI00037B8CF0
hydrogenase expression/formation protein HypE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 57 in total

View Taxonomy