ggKbase home page

OR_08142018_2_5m_0_2um_scaffold_250

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_2_5m_0_2um_scaffold_250_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2074)
DNA (2073bp) protein (691aa)
Phosphorylase n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DF97_9GAMM
glycogen phosphorylase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_2
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2052..4436)
DNA (2385bp) protein (795aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
phosphoketolase (EC:4.1.2.9)
Probable phosphoketolase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IUY2_9GAMM
OR_08142018_2_5m_0_2um_scaffold_250_3
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4493..5674)
DNA (1182bp) protein (394aa)
Acetate kinase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J1C3_RHOP2
acetate kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
OR_08142018_2_5m_0_2um_scaffold_250_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5890..7242
DNA (1353bp) protein (451aa)
Cl-channel voltage-gated family protein id=12496868 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Chloride channel protein {ECO:0000313|EMBL:GAO35296.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Cl-channel voltage-gated family protein
OR_08142018_2_5m_0_2um_scaffold_250_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7302..7469)
DNA (168bp) protein (56aa)
putative Signal transduction histidine kinase id=12494697 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_2_5m_0_2um_scaffold_250_6
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7611..7793)
DNA (183bp) protein (61aa)
Putative uncharacterized protein id=1372110 bin=GWE1_T_denit_62_9 species=Herbaspirillum seropedicae genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Gallionellales_57_15_curated
OR_08142018_2_5m_0_2um_scaffold_250_7
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7928..8821)
DNA (894bp) protein (298aa)
Uncharacterized protein id=1961505 bin=GWE2_Gallionellales_58_10 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
mechanosensitive ion channel MscS
Tax=GWE2_Gallionellales_58_10_curated
OR_08142018_2_5m_0_2um_scaffold_250_8
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8856..10808)
DNA (1953bp) protein (651aa)
Alpha amylase catalytic region n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LUS4_DESBD
alpha amylase
Tax=CG_Rhodof_03
OR_08142018_2_5m_0_2um_scaffold_250_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10828..11694)
DNA (867bp) protein (289aa)
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Marichromatium purpuratum 984 RepID=F9U4K7_MARPU
haloacid dehalogenase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_10
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11695..13839)
DNA (2145bp) protein (715aa)
Putative sucrose phosphate synthase with sucrose phosphatase and glycosyltransferase domains n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GWD8_9GAMM
sucrose phosphate synthase
Putative sucrose phosphate synthase with sucrose phosphatase and glycosyltransferase domains {ECO:0000313|EMBL:AGA90142.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
OR_08142018_2_5m_0_2um_scaffold_250_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13836..14840)
DNA (1005bp) protein (335aa)
PfkB; K00847 fructokinase [EC:2.7.1.4] id=12493773 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
PfkB domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15119..15592
DNA (474bp) protein (158aa)
MarR family transcriptional regulator id=12493780 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
MarR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15617..18349)
DNA (2733bp) protein (911aa)
Long-chain fatty-acid-CoA ligase id=1329232 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
long-chain fatty-acid-CoA ligase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18434..19357
DNA (924bp) protein (308aa)
Histone deacetylase family protein id=1329233 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
histone deacetylase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_15
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19654..21039)
DNA (1386bp) protein (462aa)
Putative uncharacterized protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W1A9_9BURK
conserved hypothetical protein
Tax=CG_Delta_03
OR_08142018_2_5m_0_2um_scaffold_250_16
unknown

Not on your lists

comp(21032..21304)
DNA (273bp) protein (91aa)

This feature has no annotations

OR_08142018_2_5m_0_2um_scaffold_250_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21705..21914
DNA (210bp) protein (70aa)
Fe-S oxidoreductase n=1 Tax=Enterovibrio calviensis RepID=UPI00036BDB54
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22046..23989)
DNA (1944bp) protein (648aa)
protease n=1 Tax=Thiobacillus thioparus RepID=UPI00037BA42F
collagenase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24068..24661)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000372602B
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24870..25451)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003602DD1
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25483..26043)
DNA (561bp) protein (187aa)
Putative uncharacterized protein id=1324271 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26040..26588)
DNA (549bp) protein (183aa)
cytochrome B561 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BC105
cytochrome b561
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26585..27025)
DNA (441bp) protein (147aa)
Transcriptional Regulator, MarR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SK15_THIDA
MarR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27147..27518
DNA (372bp) protein (124aa)
Uncharacterized protein id=1324274 bin=GWE1_T_denit_62_9 species=Acidocella sp. MX-AZ02 genus=Acidocella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27588..28433
DNA (846bp) protein (282aa)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z566_9NEIS
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_26
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28595..29500
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EBC3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE49721.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
OR_08142018_2_5m_0_2um_scaffold_250_27
unknown

Not on your lists

29580..30086
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000378A98A
OR_08142018_2_5m_0_2um_scaffold_250_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30645..30887
DNA (243bp) protein (81aa)
Putative antitoxin of toxin-antitoxin stability system n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NZB8_AROAE
antitoxin of toxin-antitoxin stability system
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_2_5m_0_2um_scaffold_250_29
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30917..31147
DNA (231bp) protein (77aa)
Addiction module toxin, Txe/YoeB family n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMK0_9GAMM
Txe/YoeB family addiction module toxin
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
OR_08142018_2_5m_0_2um_scaffold_250_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31175..31648)
DNA (474bp) protein (158aa)
Molybdenum cofactor biosynthesis protein E n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SK16_THIDA
molybdopterin synthase subunit MoaE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 30 items

View Taxonomy