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OR_07112018_10m_0_1um_scaffold_401

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07112018_10m_0_1um_scaffold_401_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..374)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D0C89
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_07112018_10m_0_1um_scaffold_401_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(382..1077)
DNA (696bp) protein (232aa)
succinate dehydrogenase subunit B (EC:1.3.5.1)
succinate dehydrogenase iron-sulfur subunit n=1 Tax=Thiobacillus thioparus RepID=UPI000366FC98
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_07112018_10m_0_1um_scaffold_401_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1079..2848)
DNA (1770bp) protein (590aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
succinate dehydrogenase subunit A (EC:1.3.5.1)
succinate dehydrogenase flavoprotein subunit n=1 Tax=Thiobacillus thioparus RepID=UPI0003760C49
OR_07112018_10m_0_1um_scaffold_401_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2845..3189)
DNA (345bp) protein (115aa)
succinate dehydrogenase subunit D (EC:1.3.5.1)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379B20E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3186..3566)
DNA (381bp) protein (127aa)
succinate dehydrogenase subunit C (EC:1.3.5.1)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000369C200
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3626..4843)
DNA (1218bp) protein (406aa)
malate dehydrogenase (EC:1.1.1.40)
malate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000366945B
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4924..5634)
DNA (711bp) protein (237aa)
flagellar biosynthesis sigma factor n=1 Tax=Thiobacillus denitrificans RepID=UPI0003789B46
RNA polymerase sigma-70 factor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5627..6325)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360C5ED
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6315..7463)
DNA (1149bp) protein (383aa)
Flagellar biosynthetic protein FlhF id=1374737 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar biosynthetic protein FlhF
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_07112018_10m_0_1um_scaffold_401_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7460..9535)
DNA (2076bp) protein (692aa)
flagellar biosynthesis protein FlhA n=1 Tax=Thiobacillus denitrificans RepID=UPI0003726BF3
flagellar biosynthesis protein FlhA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9532..10338)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365A039
flagellar biosynthetic protein FlhB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10565..11158
DNA (594bp) protein (198aa)
Putative uncharacterized protein id=1326611 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11212..12537)
DNA (1326bp) protein (442aa)
Putative helicase ATPase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIS6_THIDA
recombination factor protein RarA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12527..13135)
DNA (609bp) protein (203aa)
Outer-membrane lipoprotein carrier protein id=1327866 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
outer membrane lipoprotein carrier protein LolA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13200..13394)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BA8A6
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13500..15557)
DNA (2058bp) protein (686aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump id=1327863 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15618..15833)
DNA (216bp) protein (72aa)
hypothetical protein id=12493577 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15867..17123)
DNA (1257bp) protein (419aa)
6-phosphofructokinase (EC:2.7.1.90)
6-phosphofructokinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A6EE9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17194..17559)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378FB87
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17571..18224)
DNA (654bp) protein (218aa)
adenylate kinase (EC:2.7.4.3)
adenylate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003760FF0
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18335..19105)
DNA (771bp) protein (257aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_00057}; EC=2.7.7.38 {ECO:0000255|HAMAP-Rule:MF_00057};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000255|HAMAP-Rule:MF_00057}; Short=CKS {ECO:0000255|HAMAP-Rule:MF_00057};; Short=CMP-KDO synthase {ECO:0000255|HAMAP-Rule:MF_00057};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=KDSB_THIDA
OR_07112018_10m_0_1um_scaffold_401_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19108..19296)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D33EC
tetraacyldisaccharide-1-P 4'-kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19277..20386)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376427C
diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20373..21407)
DNA (1035bp) protein (345aa)
lipid-A-disaccharide synthase (EC:2.4.1.182)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370148E
Tax=GWE1_Thiobacillus_62_9_curated
OR_07112018_10m_0_1um_scaffold_401_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21418..21834)
DNA (417bp) protein (139aa)
Biopolymer transport exbD-related transmembrane protein id=1358970 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
biopolymer transport exbD-related transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_26
unknown

Not on your lists

21986..22432
DNA (447bp) protein (149aa)

This feature has no annotations

OR_07112018_10m_0_1um_scaffold_401_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22728..24146
DNA (1419bp) protein (473aa)
exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit id=1350203 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24110..25036)
DNA (927bp) protein (309aa)
tRNA isopentenyltransferase (EC:2.5.1.75)
tRNA delta(2)-isopentenylpyrophosphate transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D0E30
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_401_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25162..25524)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F7CA7
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_07112018_10m_0_1um_scaffold_401_30
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25789..26712)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125S2_POLSJ
hypothetical protein
Tax=GWF2_Sideroxydans_59_14_curated
Displaying items 1-30 of 31 in total

View Taxonomy