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OR_07112018_10m_0_1um_scaffold_705

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07112018_10m_0_1um_scaffold_705_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53..679)
DNA (627bp) protein (209aa)
16S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D15F7
gidB; 16S rRNA methyltransferase GidB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(676..2595)
DNA (1920bp) protein (640aa)
tRNA uridine 5-carboxymethylaminomethyl modification protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F78B2
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2656..4545)
DNA (1890bp) protein (630aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E5B11
ABC transporter ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4576..5286)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003664409
LamB/YcsF family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5283..6194)
DNA (912bp) protein (304aa)
allophanate hydrolase subunit 2 (EC:3.5.1.54)
Allophanate hydrolase subunit 2 {ECO:0000313|EMBL:AAZ98765.1}; EC=3.5.1.54 {ECO:0000313|EMBL:AAZ98765.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BF6DD
OR_07112018_10m_0_1um_scaffold_705_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6191..6769)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037024F6
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7035..8249)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B4485
HD-GYP domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8390..8722
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Bilophila RepID=E5Y281_BILWA
ArsR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_9
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8715..10853
DNA (2139bp) protein (713aa)
aas; bifunctional Aas protein (EC:6.2.1.20)
Bifunctional protein Aas n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RFX0_9RHOO
Bifunctional protein Aas {ECO:0000313|EMBL:EGK70458.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
OR_07112018_10m_0_1um_scaffold_705_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10850..12094
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI00036FD8E5
uxuA; mannonate dehydratase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_11
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12091..14643
DNA (2553bp) protein (851aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z4D5_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EEG08712.1}; Flags: Precursor;; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
hypothetical protein
OR_07112018_10m_0_1um_scaffold_705_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14730..16448)
DNA (1719bp) protein (573aa)
RNA helicase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003630CE4
DEAD/DEAH box helicase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16843..17928)
DNA (1086bp) protein (362aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361EF1F
ABC transporter ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_14
unknown

Not on your lists

17991..18212
DNA (222bp) protein (74aa)

This feature has no annotations

OR_07112018_10m_0_1um_scaffold_705_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18582..19916)
DNA (1335bp) protein (445aa)
tRNA modification GTPase MnmE id=1307773 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
tRNA modification GTPase TrmE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20038..21672)
DNA (1635bp) protein (545aa)
Membrane protein insertase YidC id=1307774 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
protein translocase subunit yidC
Tax=GWE1_Thiobacillus_62_9_curated
OR_07112018_10m_0_1um_scaffold_705_17
unknown

Not on your lists

21756..22109
DNA (354bp) protein (118aa)

This feature has no annotations

OR_07112018_10m_0_1um_scaffold_705_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22467..23813
DNA (1347bp) protein (449aa)
chromosomal replication initiator protein DnaA n=1 Tax=Thiobacillus thioparus RepID=UPI00037FD9BF
chromosome replication initiator DnaA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23993..25096
DNA (1104bp) protein (368aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta id=1307778 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25173..27458
DNA (2286bp) protein (762aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI0003613858
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_07112018_10m_0_1um_scaffold_705_21
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27813..30995)
DNA (3183bp) protein (1061aa)
Type I restriction-modification system endonuclease n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YTT1_9SYNE
type I restriction endonuclease, HsdR family
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
OR_07112018_10m_0_1um_scaffold_705_22
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(30992..32041)
DNA (1050bp) protein (350aa)
Virulence protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AWA8_9BACT
Virulence protein {ECO:0000313|EMBL:EIP99299.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
OR_07112018_10m_0_1um_scaffold_705_23
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32038..32298)
DNA (261bp) protein (87aa)
Type I restriction-modification system endonuclease n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YTT1_9SYNE
HsdR family type I site-specific deoxyribonuclease
Tax=RBG_16_Betaproteobacteria_58_11_curated
OR_07112018_10m_0_1um_scaffold_705_24
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32301..33146)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHS3_RHOMR
Uncharacterized protein {ECO:0000313|EMBL:AKH36827.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
OR_07112018_10m_0_1um_scaffold_705_25
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(33143..34264)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHS0_RHOMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN73386.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
OR_07112018_10m_0_1um_scaffold_705_26
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34261..34812)
DNA (552bp) protein (184aa)
Type I restriction modification DNA specificity domain protein n=8 Tax=Escherichia coli RepID=N3B8H4_ECOLX
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EKP50630.1}; TaxID=903921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii Naval-82.;"
EcoKI restriction-modification system protein HsdS
OR_07112018_10m_0_1um_scaffold_705_27
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34758..35582)
DNA (825bp) protein (275aa)
Type I restriction-modification system, S subunit (EC:3.1.21.3)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI0003779C0C
Type I restriction-modification system, specificity subunit S {ECO:0000313|EMBL:KFE59540.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
OR_07112018_10m_0_1um_scaffold_705_28
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35572..37194)
DNA (1623bp) protein (541aa)
Type I restriction system adenine methylase n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YTS3_9SYNE
N-6 DNA methylase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
OR_07112018_10m_0_1um_scaffold_705_29
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37593..38165)
DNA (573bp) protein (191aa)
transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036B9AE6
transcription regulator TetR family
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO43606.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
OR_07112018_10m_0_1um_scaffold_705_30
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38234..39244)
DNA (1011bp) protein (337aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SJ68_HAHCH
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ABC29306.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
Displaying 30 items

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