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OR_07232018_dam_0_1um_scaffold_876

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_876_1
Chlorobium phaeobacteroides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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3..377
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL12 RepID=U9HN49_PSEAI
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABL65968.1}; TaxID=290317 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium phaeobacteroides (strain DSM 266).;"
OR_07232018_dam_0_1um_scaffold_876_2
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316..657)
DNA (342bp) protein (114aa)
Cytochrome c class I n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1U7_HALNC
cytochrome C class I
Cytochrome c class I {ECO:0000313|EMBL:ACX96670.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_876_3
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(837..1340)
DNA (504bp) protein (168aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KZ99_HALNC
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ACX95772.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_876_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1539..3353)
DNA (1815bp) protein (605aa)
von Willebrand factor type A n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B0T4_9PROT
Nitric oxide reductase {ECO:0000313|EMBL:KHD10123.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
von Willebrand factor type A
OR_07232018_dam_0_1um_scaffold_876_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3368..4186)
DNA (819bp) protein (273aa)
ATPase AAA n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB45_9PROT
ATPase AAA {ECO:0000313|EMBL:GAO35217.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
cbbQ; ATPase AAA
OR_07232018_dam_0_1um_scaffold_876_6
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4200..4469)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI00037D65DB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34304.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
OR_07232018_dam_0_1um_scaffold_876_7
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4480..5061)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI000378C620
Cytochrome C oxidase subunit III
Tax=BJP_IG2102_Gammaproteobacteria_62_140
OR_07232018_dam_0_1um_scaffold_876_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5110..6510)
DNA (1401bp) protein (467aa)
Nitric-oxide reductase subunit B n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLA1_THIDA
nitric-oxide reductase subunit B
Nitric-oxide reductase subunit B {ECO:0000313|EMBL:AAZ96514.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_07232018_dam_0_1um_scaffold_876_9
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6551..6976)
DNA (426bp) protein (142aa)
Cytochrome c class I n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQX3_SIDLE
Cytochrome C class I
Cytochrome c class I {ECO:0000313|EMBL:ADE11359.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
OR_07232018_dam_0_1um_scaffold_876_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7532..8767
DNA (1236bp) protein (412aa)
Integrase catalytic region n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L040_HALNC
integrase
Integrase catalytic region {ECO:0000313|EMBL:ACX96063.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_876_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8760..9497
DNA (738bp) protein (246aa)
IstB domain protein ATP-binding protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L039_HALNC
IstB domain-containing protein ATP-binding protein
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:ACX96062.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_876_12
unknown

Not on your lists

comp(9980..10420)
DNA (441bp) protein (147aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_13
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10517..11245)
DNA (729bp) protein (243aa)
Metallophosphoesterase n=1 Tax=Pseudomonas syringae pv. aesculi str. 0893_23 RepID=F3DJZ0_9PSED
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KIL03283.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
Metallophosphoesterase
OR_07232018_dam_0_1um_scaffold_876_14
unknown

Not on your lists

comp(11393..11755)
DNA (363bp) protein (121aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_15
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11855..12646)
DNA (792bp) protein (264aa)
phosphoprotein phosphatase (EC:3.1.3.16)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003608562
Phosphoprotein phosphatase {ECO:0000313|EMBL:EHQ52204.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
OR_07232018_dam_0_1um_scaffold_876_16
unknown

Not on your lists

comp(12661..12927)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida SJ3 RepID=U7RC44_PSEPU
OR_07232018_dam_0_1um_scaffold_876_17
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(12931..13569)
DNA (639bp) protein (213aa)
metallophosphoesterase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B41726
phosphoesterase
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
OR_07232018_dam_0_1um_scaffold_876_18
unknown

Not on your lists

comp(13572..13862)
DNA (291bp) protein (97aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13859..14239)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W481_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM41056.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
OR_07232018_dam_0_1um_scaffold_876_20
unknown

Not on your lists

comp(14435..14761)
DNA (327bp) protein (109aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_21
unknown

Not on your lists

comp(14778..15101)
DNA (324bp) protein (108aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15106..15918)
DNA (813bp) protein (271aa)
Metallophosphoesterase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3D1_ACISJ
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ABM40756.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
OR_07232018_dam_0_1um_scaffold_876_23
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15927..16718)
DNA (792bp) protein (264aa)
Metallophosphoesterase n=1 Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1K1B3_BURCC
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACA89201.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
OR_07232018_dam_0_1um_scaffold_876_24
unknown

Not on your lists

comp(16684..16851)
DNA (168bp) protein (56aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_25
unknown

Not on your lists

comp(16844..17113)
DNA (270bp) protein (90aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_26
unknown

Not on your lists

17590..18360
DNA (771bp) protein (257aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_876_27
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18610..21495)
DNA (2886bp) protein (962aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B1Q1_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:GAD63789.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
diguanylate cyclase/phosphodiesterase
OR_07232018_dam_0_1um_scaffold_876_28
gamma proteobacterium SS-5, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21544..23145)
DNA (1602bp) protein (534aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RN75_ALLVD
Methyl-accepting chemotaxis sensory transducer THIOSS5v2_1127 {ECO:0000313|EMBL:AHX25871.1}; TaxID=947516 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium SS-5.;"
methyl-accepting chemotaxis sensory transducer
OR_07232018_dam_0_1um_scaffold_876_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23404..24066
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI0003647FC4
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFI49966.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
transcriptional regulator, TetR family protein
OR_07232018_dam_0_1um_scaffold_876_30
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24204..24872)
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JTZ0_9GAMM
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEM46742.1}; Flags: Precursor;; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
Displaying items 1-30 of 31 in total

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