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OR_07232018_dam_0_1um_scaffold_347

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_347_1
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..792)
DNA (792bp) protein (264aa)
cysS; Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS) (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Cysteine--tRNA ligase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CRF1_THIA3
OR_07232018_dam_0_1um_scaffold_347_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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966..2045
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CRF0_THIA3
Uncharacterized protein {ECO:0000313|EMBL:CDW92652.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Protein prenylyltransferase
OR_07232018_dam_0_1um_scaffold_347_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2092..3405
DNA (1314bp) protein (438aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X507_THIK1
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:CDW92653.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
ErfK/YbiS/YcfS/YnhG family protein
OR_07232018_dam_0_1um_scaffold_347_4
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3405..4049
DNA (645bp) protein (215aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X506_THIK1
OR_07232018_dam_0_1um_scaffold_347_5
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4069..4560
DNA (492bp) protein (164aa)
ppiB; Peptidyl-prolyl cis-trans isomerase B (PPIase B) (Rotamase B) (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CRE7_THIA3
OR_07232018_dam_0_1um_scaffold_347_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4645..5448
DNA (804bp) protein (268aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylglucosamine diphosphatase {ECO:0000256|HAMAP-Rule:MF_00575}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X504_THIK1
UDP-2,3-diacylglucosamine hydrolase
OR_07232018_dam_0_1um_scaffold_347_7
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5601..6215
DNA (615bp) protein (205aa)
Tfp pilus assembly protein FimT-like protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X503_THIK1
Tfp pilus assembly protein FimT-like protein
Tfp pilus assembly protein FimT-like protein {ECO:0000313|EMBL:ADG29827.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_8
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6199..6756
DNA (558bp) protein (186aa)
Type IV pilus modification protein PilV n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X502_THIK1
type IV pilus modification protein PilV
Type IV pilus modification protein PilV {ECO:0000313|EMBL:ADG29826.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_9
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6753..7715
DNA (963bp) protein (321aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X501_THIK1
Putative Type IV fimbrial biogenesis protein PilW {ECO:0000313|EMBL:CDW92660.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_347_10
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7720..8367
DNA (648bp) protein (216aa)
Putative Tfp pilus assembly protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X500_THIK1
Tfp pilus assembly protein
Putative Tfp pilus assembly protein {ECO:0000313|EMBL:ADG29824.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8407..11940
DNA (3534bp) protein (1178aa)
Putative type 4 fimbrial biogenesis protein PilY1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Z9_THIK1
Putative type 4 fimbrial biogenesis protein PilY1 {ECO:0000313|EMBL:ADG29823.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
type 4 fimbrial biogenesis protein PilY1
OR_07232018_dam_0_1um_scaffold_347_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11969..12448
DNA (480bp) protein (160aa)
PilE protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Z8_THIK1
PilE protein {ECO:0000313|EMBL:CDW92663.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
PilE protein
OR_07232018_dam_0_1um_scaffold_347_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12710..13606
DNA (897bp) protein (299aa)
Transposase IS4 family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZK4_THIK1
transposase IS4 family protein
Transposase IS4 family protein {ECO:0000313|EMBL:ADG32402.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_14
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13909..14472
DNA (564bp) protein (188aa)
Putative type-4 fimbrial pilin related signal peptide protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Z7_THIK1
Putative type-4 fimbrial pilin related signal peptide protein {ECO:0000313|EMBL:CDW92664.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
type-4 fimbrial pilin related signal peptide protein
OR_07232018_dam_0_1um_scaffold_347_15
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14491..15735
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CRD8_THIA3
Uncharacterized protein {ECO:0000313|EMBL:CDW92665.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_347_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15855..17375
DNA (1521bp) protein (507aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Lysine--tRNA ligase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Z5_THIK1
lysyl-tRNA synthetase
OR_07232018_dam_0_1um_scaffold_347_17
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17380..18324
DNA (945bp) protein (315aa)
Putative adenosine kinase {ECO:0000313|EMBL:CDW92667.1}; EC=2.7.1.20 {ECO:0000313|EMBL:CDW92667.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
PfkB domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Z4_THIK1
PfkB domain-containing protein
OR_07232018_dam_0_1um_scaffold_347_18
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18454..19155
DNA (702bp) protein (234aa)
Uncharacterized protein n=2 Tax=Thiomonas RepID=D6CRD5_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG29817.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_19
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19231..20637)
DNA (1407bp) protein (469aa)
putative 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) (EC:2.1.1.-)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CRD4_THIA3
OR_07232018_dam_0_1um_scaffold_347_20
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20711..21550)
DNA (840bp) protein (280aa)
3'-5' exonuclease, PolB-like protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Z1_THIK1
3'-5' exonuclease
3'-5' exonuclease, PolB-like protein {ECO:0000313|EMBL:ADG29815.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_21
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21537..22595)
DNA (1059bp) protein (353aa)
RNA polymerase sigma factor RpoS n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Z0_THIK1
RNA polymerase sigma factor RpoS
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_22
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22605..23567)
DNA (963bp) protein (321aa)
Peptidase M23 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Y9_THIK1
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ADG29813.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_23
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23584..24264)
DNA (681bp) protein (227aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:ADG29812.1}; EC=2.1.1.77 {ECO:0000313|EMBL:ADG29812.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4Y8_THIK1
OR_07232018_dam_0_1um_scaffold_347_24
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24435..25190)
DNA (756bp) protein (252aa)
surE; Multifunctional protein surE (Stationary-phase survival protein surE) [Includes: 5'/3'-nucleotidase (Nucleoside monophosphate phosphohydrolase); Exopolyphosphatase ] (EC:3.1.3.5 3.1.3.6 3.6.1.11)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
5'-nucleotidase SurE n=2 Tax=Thiomonas RepID=D5X4Y7_THIK1
OR_07232018_dam_0_1um_scaffold_347_trna_3
unknown

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comp(25355..25441)
DNA (87bp)
transferRNA Leu
OR_07232018_dam_0_1um_scaffold_347_trna_2
unknown

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comp(25644..25722)
DNA (79bp)
transferRNA His
OR_07232018_dam_0_1um_scaffold_347_25
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25783..27705)
DNA (1923bp) protein (641aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) PpiD (EC:5.2.1.8)
Putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) PpiD n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ30_THIA3
OR_07232018_dam_0_1um_scaffold_347_trna_1
unknown

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comp(27840..27912)
DNA (73bp)
transferRNA Val
OR_07232018_dam_0_1um_scaffold_347_26
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27984..28256)
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein n=2 Tax=Thiomonas RepID=D5WZV7_THIK1
hupB; DNA-binding protein HU-beta (NS1) (HU-1)
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ADG30523.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_347_27
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28444..29547)
DNA (1104bp) protein (368aa)
Tartrate dehydrogenase/decarboxylase (TDH) (D-malate dehydrogenase [decarboxylating]) (EC:1.1.1.83 1.1.1.93 4.1.1.73)
Tartrate dehydrogenase/decarboxylase (TDH) (D-malate dehydrogenase [decarboxylating]) {ECO:0000313|EMBL:CAZ88108.1}; EC=1.1.1.83 {ECO:0000313|EMBL:CAZ88108.1};; EC=1.1.1.93 {ECO:0000313|EMBL:CAZ88108.1};; EC=4.1.1.73 {ECO:0000313|EMBL:CAZ88108.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Tartrate dehydrogenase/decarboxylase (TDH) (D-malate dehydrogenase [decarboxylating]) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQ28_THIA3
Displaying items 1-30 of 35 in total

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