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OR_07232018_dam_0_1um_scaffold_409

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_409_1
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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237..746
DNA (510bp) protein (170aa)
Helper of transposition of ISThsp5, IS21 family n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CS22_THIA3
istB6; helper of transposition of ISThsp5, IS21 family
Helper of transposition of ISThsp5, IS21 family {ECO:0000313|EMBL:CAZ87413.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(748..1536)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X0M4_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD43680.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
integrase catalytic subunit
OR_07232018_dam_0_1um_scaffold_409_3
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1650..1973)
DNA (324bp) protein (108aa)
Transposase IS3/IS911 family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TCQ2_ACIDE
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:EER57744.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
transposase IS3/IS911
OR_07232018_dam_0_1um_scaffold_409_4
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2370..3053
DNA (684bp) protein (228aa)
Putative Electron transport protein SCO1/SenC n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPU2_THIA3
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:CDW94942.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Electron transport protein SCO1/SenC
OR_07232018_dam_0_1um_scaffold_409_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3121..4920)
DNA (1800bp) protein (600aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZN0_THIK1
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ADG30446.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
TRAP dicarboxylate transporter subunit DctM
OR_07232018_dam_0_1um_scaffold_409_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4921..5514)
DNA (594bp) protein (198aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZN1_THIK1
tripartite AtP-independent periplasmic transporter subunit DctQ
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADG30447.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_409_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5735..6802)
DNA (1068bp) protein (356aa)
selD; Selenide, water dikinase (Selenophosphate synthetase) (Selenium donor protein) (EC:2.7.9.3)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Selenide, water dikinase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPU5_THIA3
OR_07232018_dam_0_1um_scaffold_409_8
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6824..7714)
DNA (891bp) protein (297aa)
Putative Bacterial regulatory protein, LysR, yeiE, rscR n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPU6_THIA3
putative Bacterial regulatory protein, LysR, yeiE, rscR
Putative Bacterial regulatory protein, LysR, yeiE, rscR {ECO:0000313|EMBL:CAZ88026.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_9
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7993..8529
DNA (537bp) protein (179aa)
Transcriptional regulator, BadM/Rrf2 family n=2 Tax=Thiomonas RepID=D5WZN4_THIK1
iscR; HTH-type transcriptional regulator iscR
HTH-type transcriptional regulator iscR {ECO:0000313|EMBL:CAZ88027.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_10
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8650..9870
DNA (1221bp) protein (407aa)
cysteine desulfurase IscS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Cysteine desulfurase n=2 Tax=Thiomonas RepID=D5WZN5_THIK1
OR_07232018_dam_0_1um_scaffold_409_11
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9973..10398
DNA (426bp) protein (142aa)
NifU-like protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPU9_THIA3
iscU; NifU-like protein
NifU-like protein {ECO:0000313|EMBL:CAZ88029.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10422..10745
DNA (324bp) protein (108aa)
Iron-sulfur cluster assembly protein IscA n=2 Tax=Thiomonas RepID=D5WZN7_THIK1
iron-sulfur cluster assembly protein IscA
FeS cluster assembly protein {ECO:0000313|EMBL:CDW94952.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_409_13
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10759..11295
DNA (537bp) protein (179aa)
Co-chaperone protein HscB homolog n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPV1_THIA3
putative Co-chaperone protein hscB (Hsc20)
Co-chaperone protein HscB homolog {ECO:0000256|HAMAP-Rule:MF_00682}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11378..13273
DNA (1896bp) protein (632aa)
Chaperone protein HscA homolog n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZN9_THIK1
Chaperone protein HscA homolog {ECO:0000256|HAMAP-Rule:MF_00679}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Fe-S protein assembly chaperone HscA
OR_07232018_dam_0_1um_scaffold_409_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13300..13638
DNA (339bp) protein (113aa)
Ferredoxin, 2Fe-2S type, ISC system n=2 Tax=Thiomonas RepID=D5WZP0_THIK1
fdx2; [2Fe-2S] ferredoxin
[2Fe-2S] ferredoxin {ECO:0000313|EMBL:CAZ88033.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13613..15040)
DNA (1428bp) protein (476aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:ADG30457.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ADG30457.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
DNA polymerase III, epsilon subunit n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZP1_THIK1
OR_07232018_dam_0_1um_scaffold_409_17
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15113..16342)
DNA (1230bp) protein (410aa)
Putative long-chain fatty acid transport protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPV5_THIA3
putative long-chain fatty acid transport protein
Putative long-chain fatty acid transport protein {ECO:0000313|EMBL:CAZ88035.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_18
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16623..16895)
DNA (273bp) protein (91aa)
Probable Fe(2+)-trafficking protein n=2 Tax=Thiomonas RepID=D5WZP3_THIK1
yggX; Fe(II) trafficking protein YggX
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_409_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16960..18348)
DNA (1389bp) protein (463aa)
Amino-acid acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01105}; EC=2.3.1.1 {ECO:0000256|HAMAP-Rule:MF_01105};; N-acetylglutamate synthase {ECO:0000256|HAMAP-Rule:MF_01105}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Amino-acid acetyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZP4_THIK1
amino-acid N-acetyltransferase
OR_07232018_dam_0_1um_scaffold_409_20

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18410..19624
DNA (1215bp) protein (405aa)
Putative ATP-dependent RNA helicase hrpA n=1 Tax=mine drainage metagenome RepID=E6PWE8_9ZZZZ
Putative ATP-dependent RNA helicase hrpA {ECO:0000313|EMBL:CBH99255.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ATP-dependent helicase HrpA
Displaying 20 items

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