ggKbase home page

FFSP_09242018_shore_0_2um_scaffold_1255

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_09242018_shore_0_2um_scaffold_1255_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..402)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381F7FE
diguanylate cyclase/phosphodiesterase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_09242018_shore_0_2um_scaffold_1255_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(399..1247)
DNA (849bp) protein (283aa)
hypothetical protein id=12493377 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_09242018_shore_0_2um_scaffold_1255_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1480..3360
DNA (1881bp) protein (627aa)
helicase n=1 Tax=Thiobacillus thioparus RepID=UPI0003725147
helicase c2
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_09242018_shore_0_2um_scaffold_1255_4
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3453..3767
DNA (315bp) protein (105aa)
hypothetical protein id=12498689 bin=THIO_MID species=Burkholderia sp. YI23 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative helix-turn-helix domain protein
Uncharacterized protein {ECO:0000313|EMBL:AET89276.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
FFSP_09242018_shore_0_2um_scaffold_1255_5
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3760..4044
DNA (285bp) protein (95aa)
Transcriptional regulator with Fis-type helix-turn-helix motif id=12495553 bin=THIO_HI species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Transcriptional regulator with Fis-type helix-turn-helix motif
Transcriptional regulator with Fis-type helix-turn-helix motif {ECO:0000313|EMBL:ACO76681.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
FFSP_09242018_shore_0_2um_scaffold_1255_6
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4613..4876
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNM6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDM84314.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
hypothetical protein
FFSP_09242018_shore_0_2um_scaffold_1255_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4900..6018)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAG4_NITMU
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_09242018_shore_0_2um_scaffold_1255_8
unknown

Not on your lists

6069..6368
DNA (300bp) protein (100aa)

This feature has no annotations

FFSP_09242018_shore_0_2um_scaffold_1255_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6224..7414)
DNA (1191bp) protein (397aa)
hypothetical protein; K02004 putative ABC transport system permease protein id=12498501 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_09242018_shore_0_2um_scaffold_1255_10
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7489..8025)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PLD1_9ZZZZ
Tax=CG_Hydro_01
FFSP_09242018_shore_0_2um_scaffold_1255_11
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8035..8379)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PLD2_9ZZZZ
Tax=CG_Hydro_01
FFSP_09242018_shore_0_2um_scaffold_1255_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8449..9120)
DNA (672bp) protein (224aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00035E0465
ABC transporter-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_09242018_shore_0_2um_scaffold_1255_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9117..10286)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360E6B1
secretion protein HlyD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_09242018_shore_0_2um_scaffold_1255_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10288..12156
DNA (1869bp) protein (623aa)
FAD-dependent cmnm(5)s(2)U34 oxidoreductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037927C2
mnmC; 5-methylaminomethyl-2-thiouridine methyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_09242018_shore_0_2um_scaffold_1255_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12157..12480)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036260D3
flagella synthesis protein FlgN
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 15 items

View Taxonomy