ggKbase home page

OR_08142018_10m_0_1um_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_104_1
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..328)
DNA (327bp) protein (109aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW60_ACCPU
efflux transporter RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACV37870.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
OR_08142018_10m_0_1um_scaffold_104_2
unknown

Not on your lists

758..997
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036E0BF2
OR_08142018_10m_0_1um_scaffold_104_3
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1407..2066)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA026 RepID=U8NB66_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW91974.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
OR_08142018_10m_0_1um_scaffold_104_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2282..2569)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA028 RepID=U8NK25_PSEAI
transcription regulator (helix turn helix motif) XRE family
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2873..3220
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B9263
lipoprotein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3488..4294
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F317D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4402..4701
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003680820
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4724..5605
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D8D51
RepA replication protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5811..6449
DNA (639bp) protein (213aa)
ParA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BC195
ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6446..6691
DNA (246bp) protein (82aa)
parB partition protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E0639
parB partition protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_11
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6688..7221
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0AB2
transposase
Transposase {ECO:0000313|EMBL:AJP47690.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
OR_08142018_10m_0_1um_scaffold_104_12
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7218..7742
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743BE1
peptidase
Peptidase {ECO:0000313|EMBL:AJP47689.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
OR_08142018_10m_0_1um_scaffold_104_13
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8038..9978
DNA (1941bp) protein (647aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUX8_POLNA
Type VI secretion protein {ECO:0000313|EMBL:AJP47688.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
type VI secretion protein
OR_08142018_10m_0_1um_scaffold_104_14
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10073..11794)
DNA (1722bp) protein (574aa)
Conserved domain protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60AW1_METCA
Conserved domain protein {ECO:0000313|EMBL:AAU93121.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_104_15
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11775..16568)
DNA (4794bp) protein (1598aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI000368232B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAU93120.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
OR_08142018_10m_0_1um_scaffold_104_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16759..17007
DNA (249bp) protein (83aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6D1V6_PSEST
Strain MEP34 contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92513.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_104_17
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17007..19745
DNA (2739bp) protein (913aa)
Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4Y278_9PROT
Uncharacterized protein {ECO:0000313|EMBL:ESS14724.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_104_18
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19745..20746
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00035D9E0D
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
OR_08142018_10m_0_1um_scaffold_104_19
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20759..23968
DNA (3210bp) protein (1070aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00035DBF3F
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
OR_08142018_10m_0_1um_scaffold_104_20
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23965..24465
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI0003781971
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
OR_08142018_10m_0_1um_scaffold_104_21
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24475..27243
DNA (2769bp) protein (923aa)
RNA polymerase-associated protein RapA {ECO:0000313|EMBL:ESS14719.1}; EC=3.6.4.- {ECO:0000313|EMBL:ESS14719.1};; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
helicase n=1 Tax=Pseudomonas mandelii RepID=UPI0003707BCD
prophage LambdaMc01, SNF2 family helicase
OR_08142018_10m_0_1um_scaffold_104_22
Microgenomates bacterium GW2011_GWF1_46_12, Microgenomates, Bacteria

Not on your lists

27253..28119
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0002D834DD
Polymerase beta domain protein region protein {ECO:0000313|EMBL:KKU20293.1}; TaxID=1618538 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWF1_46_12.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_104_23
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28187..28894
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AR71_DELSC
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEF88830.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
OR_08142018_10m_0_1um_scaffold_104_24
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29268..31259
DNA (1992bp) protein (664aa)
conjugal transfer protein TraG n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C7ECF
Conjugal transfer protein TraG {ECO:0000313|EMBL:AJP47679.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TraG
OR_08142018_10m_0_1um_scaffold_104_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31256..31741
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F80A4
CopG family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_26
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31738..32754
DNA (1017bp) protein (339aa)
conjugal transfer protein TrbB n=1 Tax=Thiobacillus denitrificans RepID=UPI000374E989
conjugal transfer protein TrbB
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AJP47677.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
OR_08142018_10m_0_1um_scaffold_104_27
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32751..33083
DNA (333bp) protein (111aa)
conjugal transfer protein TrbC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003665B36
conjugal transfer protein TrbC
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AJP47676.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
OR_08142018_10m_0_1um_scaffold_104_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33080..33346
DNA (267bp) protein (89aa)
conjugal transfer protein TrbD n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ED53C
conjugal transfer protein TrbD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_104_29
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33357..35795
DNA (2439bp) protein (813aa)
conjugal transfer protein TrbE n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D4CA
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP47674.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TrbE
OR_08142018_10m_0_1um_scaffold_104_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35792..36520
DNA (729bp) protein (243aa)
conjugal transfer protein TrbJ n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0BFB
conjugal transfer protein TrbJ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 70 in total

View Taxonomy