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OR_08142018_10m_0_1um_scaffold_175

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_175_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..108
DNA (108bp) protein (36aa)
Integrase core domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLG7_VARPD
integrase core domain-containing protein
Integrase core domain-containing protein {ECO:0000313|EMBL:AGU53303.1}; Putative transposase {ECO:0000313|EMBL:AGU52980.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
OR_08142018_10m_0_1um_scaffold_175_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62..1039)
DNA (978bp) protein (326aa)
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:CDH46083.1}; EC=2.1.1.72 {ECO:0000313|EMBL:CDH46083.1};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
adenine-specific DNA-methyltransferase (EC:2.1.1.72)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SG96_PELPB
OR_08142018_10m_0_1um_scaffold_175_3
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1050..1868)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZBV3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EME71920.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_175_4
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1835..2593)
DNA (759bp) protein (253aa)
Helicase domain-containing protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AH80_9PROT
Helicase domain-containing protein {ECO:0000313|EMBL:EME71919.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
DNA-dependent ATPase, SNF2 family protein
OR_08142018_10m_0_1um_scaffold_175_5
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2615..2956)
DNA (342bp) protein (114aa)
Helicase domain-containing protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AH80_9PROT
Helicase domain-containing protein {ECO:0000313|EMBL:EME71919.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
DNA/RNA SNF2 family helicase
OR_08142018_10m_0_1um_scaffold_175_6
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3034..4845)
DNA (1812bp) protein (604aa)
Helicase domain-containing protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AH80_9PROT
Helicase domain-containing protein {ECO:0000313|EMBL:EME71919.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
DEAD-like helicase superfamily protein
OR_08142018_10m_0_1um_scaffold_175_7
Yersinia pseudotuberculosis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5141..6715)
DNA (1575bp) protein (525aa)
phage integrase family protein n=1 Tax=Janthinobacterium lividum RepID=UPI0002897175
shufflon-specific DNA recombinase
Shufflon-specific DNA recombinase {ECO:0000313|EMBL:ABS45700.1}; TaxID=349747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pseudotuberculosis serotype O:1b (strain IP 31758).;"
OR_08142018_10m_0_1um_scaffold_175_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6936..7493)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003674D29
2'-5' RNA ligase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_175_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7486..7968)
DNA (483bp) protein (161aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000361FDCA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_175_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7961..8665)
DNA (705bp) protein (235aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037A9EDA
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_175_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8662..10935)
DNA (2274bp) protein (758aa)
cell division protein FtsK n=1 Tax=Thiobacillus denitrificans RepID=UPI000376A5D2
DNA translocase FtsK
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_175_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11046..12002
DNA (957bp) protein (319aa)
thioredoxin reductase (EC:1.8.1.9)
thioredoxin reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003793F89
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_175_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12032..12694
DNA (663bp) protein (221aa)
Putative uncharacterized protein id=1348792 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12708..13163
DNA (456bp) protein (152aa)
Bacterioferritin comigratory protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SK42_THIDA
bacterioferritin comigratory protein
Bacterioferritin comigratory protein {ECO:0000313|EMBL:AAZ96952.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_175_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13298..14500)
DNA (1203bp) protein (401aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
tryptophanyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003757139
OR_08142018_10m_0_1um_scaffold_175_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14538..15245)
DNA (708bp) protein (236aa)
peptidase M50 n=1 Tax=Thiobacillus thioparus RepID=UPI0003625CFA
integral membrane transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15251..15874)
DNA (624bp) protein (208aa)
translation factor Sua5 n=1 Tax=Thiobacillus thioparus RepID=UPI0003710430
translation factor Sua5
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15881..16297)
DNA (417bp) protein (139aa)
Phosphoesterase PHP id=1348883 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
phosphoesterase PHP
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16823..17470
DNA (648bp) protein (216aa)
Probable intracellular septation protein A id=1348884 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
intracellular septation protein A
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17470..17772
DNA (303bp) protein (101aa)
YCII-related protein id=1348885 bin=GWE1_T_denit_62_9 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17769..18032
DNA (264bp) protein (88aa)
BolA family protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F6B19
stress-induced morphogen BolA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_175_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18048..18857
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FAF06
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18917..19168
DNA (252bp) protein (84aa)
Protein hfq id=1348888 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RNA-binding protein Hfq
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19175..20794)
DNA (1620bp) protein (540aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361616F
glycosyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_175_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20772..21491)
DNA (720bp) protein (240aa)
hypothetical protein id=12493083 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
OR_08142018_10m_0_1um_scaffold_175_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21507..22256)
DNA (750bp) protein (250aa)
Glycosyltransferase, group 2 family protein id=1348029 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
group 2 family glycosyl transferase
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_trna_2
unknown

Not on your lists

comp(22286..22373)
DNA (88bp)
transferRNA Ser
OR_08142018_10m_0_1um_scaffold_175_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22529..23053
DNA (525bp) protein (175aa)
Protein GrpE id=1348028 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
molecular chaperone protein GrpE
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23120..25033
DNA (1914bp) protein (638aa)
Chaperone protein DnaK id=1348027 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
molecular chaperone DnaK
Tax=GWE1_Thiobacillus_62_9_curated
OR_08142018_10m_0_1um_scaffold_175_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25151..26272
DNA (1122bp) protein (374aa)
Chaperone protein DnaJ id=1348026 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
molecular chaperone protein DnaJ
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 71 in total

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