ggKbase home page

OR_08142018_10m_0_1um_scaffold_479

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_479_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..138)
DNA (138bp) protein (46aa)
hypothetical protein; K12066 conjugal transfer pilus assembly protein TraK id=12497078 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_479_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101..691)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003711550
type IV conjugative transfer system protein TraE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_479_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(691..981)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BB3F6
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_479_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1007..1324)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E0D72
TraA protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_479_5
unknown

Not on your lists

comp(1362..1601)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F8B0
OR_08142018_10m_0_1um_scaffold_479_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1611..2132)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E8A37
lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
OR_08142018_10m_0_1um_scaffold_479_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2129..2386)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379B5D5
lytic transglycosylase catalytic subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
OR_08142018_10m_0_1um_scaffold_479_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3177..4943
DNA (1767bp) protein (589aa)
histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI36_THIDA
OR_08142018_10m_0_1um_scaffold_479_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4927..5556
DNA (630bp) protein (210aa)
Two Component Transcriptional Regulator, LuxR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI37_THIDA
LuxR family transcriptional regulator
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ97696.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_10
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5864..6181
DNA (318bp) protein (106aa)
hypothetical protein id=12495117 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Membrane protein {ECO:0000313|EMBL:GAO35433.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
OR_08142018_10m_0_1um_scaffold_479_11
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6267..6629)
DNA (363bp) protein (121aa)
Diacylglycerol kinase n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JY02_BURP8
diacylglycerol kinase
Tax=CG_Beta_01
OR_08142018_10m_0_1um_scaffold_479_12
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6635..8689)
DNA (2055bp) protein (685aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031FF2A6
PA-phosphatase {ECO:0000313|EMBL:GAO35504.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
PA-phosphatase-like phosphoesterase
OR_08142018_10m_0_1um_scaffold_479_13
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8726..9946
DNA (1221bp) protein (407aa)
Major facilitator superfamily MFS_1 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q126R7_POLSJ
major facilitator transporter
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
OR_08142018_10m_0_1um_scaffold_479_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10596..11027)
DNA (432bp) protein (144aa)
ATP synthase epsilon chain 1 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=ATPE1_THIDA
H+-transporting two-sector ATPase, delta/subunit epsilon
ATP synthase epsilon chain 1 {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit 1 {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit 1 {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11072..13630)
DNA (2559bp) protein (853aa)
Putative tetrathionate reductase, subunit A n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI39_THIDA
Putative tetrathionate reductase, subunit A {ECO:0000313|EMBL:AAZ97694.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
tetrathionate reductase subunit A
OR_08142018_10m_0_1um_scaffold_479_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14053..15138)
DNA (1086bp) protein (362aa)
Putative tetrathionate reductase subunit C n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI40_THIDA
tetrathionate reductase subunit C
Putative tetrathionate reductase subunit C {ECO:0000313|EMBL:AAZ97693.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15141..15881)
DNA (741bp) protein (247aa)
Putative tetrathionate reductase subunit B n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI41_THIDA
tetrathionate reductase subunit B
Putative tetrathionate reductase subunit B {ECO:0000313|EMBL:AAZ97692.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16343..17680)
DNA (1338bp) protein (446aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF70_THIDA
periplasmic sensor signal transduction histidine kinase
OR_08142018_10m_0_1um_scaffold_479_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17677..18390)
DNA (714bp) protein (238aa)
Two component Transcriptional regulator, Winged helix family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF71_THIDA
two component transcriptional regulator
Two component Transcriptional regulator, Winged helix family {ECO:0000313|EMBL:AAZ98744.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18453..20234
DNA (1782bp) protein (594aa)
thiol:disulfide interchange protein DsbD (EC:1.8.1.8)
Thiol:disulfide interchange protein DsbD {ECO:0000256|HAMAP-Rule:MF_00399}; EC=1.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00399};; Protein-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_00399}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Thiol:disulfide interchange protein DsbD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF72_THIDA
OR_08142018_10m_0_1um_scaffold_479_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20237..21064
DNA (828bp) protein (276aa)
Probable thiol:disulfide interchange protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF73_THIDA
thiol:disulfide interchange protein
Probable thiol:disulfide interchange protein {ECO:0000313|EMBL:AAZ98742.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21195..21635
DNA (441bp) protein (147aa)
Probable thiol:disulfide interchange protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF73_THIDA
thiol:disulfide interchange protein
Probable thiol:disulfide interchange protein {ECO:0000313|EMBL:AAZ98742.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21668..22438
DNA (771bp) protein (257aa)
Thiol:disulfide interchange protein DsbG n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF75_THIDA
dsbG; disulfide isomerase/thiol-disulfide oxidase
Thiol:disulfide interchange protein DsbG {ECO:0000313|EMBL:AAZ98740.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
OR_08142018_10m_0_1um_scaffold_479_24
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22788..23063)
DNA (276bp) protein (92aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
Serine hydroxymethyltransferase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LJX3_RALME
Displaying 24 items

View Taxonomy